Clone UFO12450 Report

Search the DGRC for UFO12450

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:124
Well:50
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcripteco-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12450.5prime Sequence

1039 bp (912 high quality bases) assembled on 2012-10-19

> UFO12450.5prime
GTCGACATGGAGACCCCGACGGGTAGTGGGCGTCCCAGTCGCATGGCCAC
TCCGCGCCTTTCGGAGCGCAAGCGGCAACTGTTTGGCAGTCCCAGATCCA
GGCTGCGCCAAATCAACGACGACGAGGATGATGCGGACGTAGACAGTCTG
GGTGTCTTGCCATTAAAGACCCATGTGGCGGCCAACAGGAAGGGCAGGAG
TCTCTTCGCCGCAGTCCCCGGCAAGTCAAGCAGCAGTGCGAACAGCAGCC
CGGAAACCAACAAGGAGAACAAAAAAACCCGTGGCGGAGTCATGACTGCC
ACGGCGGAGCAGCTGCCCCAATTGTTTACAGCCACCATGCGGCTAAATAG
CAACAGCAGCAGCAATAGTCGCAACAGCAGCCCCCGTCAGACGAGGGTCC
AAAGAAAGCGAGCGGATTCTTCAATGTCGTCGCCCACCTCTTCCTCTGAA
GGAACTCCTTCTTCCAGAGCCAGAAATAGCATCAGACGCAGTCCACGAAC
CTTCAGTGCGCAAAAGGATCCAGATGCGTTCTCCTCGCCAGAATCTTTTC
AGACTAGGCTAAGCAAGGTGGCAGCTATGCTAATGAAGGGTCAGGATTCA
AGATCAATGTTAGAAAAATCAAAGAAGAAACACAACCACAGCCTAAAGAC
CACTGCCCAAGTGCATACAACTAAACCGAAGAAAACGAGCCCAGCTGAAG
AGTCCCAGTCGGACGACGAGAAACCTTCTAGCAGTAAGAACTCCAGGAAG
AATACAGAAGTTCGTGAAACAAGGAGCTCGCAAATCATCAGTCCAAAAAC
CAGGAATAGACGAAGACCCTTCACGTCGGCGGATTATAAACTGCAAGACG
CTGAAGGCTGCTGCCCATCTACATGAGATATGAGGTCCGTATGATGAGAA
AAAACAGCAGCAGTTTGGCTAGAAAACATCAGAAGCAGATCCAGTCCCCG
GGTAGAAGGTGTCAGTCCAAGACGATGCAGTAAACGAAACTGGGAAACCC
AACAATTAATACATGCGAATTCTTCCGAAAGTTTGCCAC

UFO12450.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
eco-RB 3485 CG8598-RB 97..1123 6..1029 4640 97.6 Plus
eco-RA 3654 CG8598-RA 266..1292 6..1029 4640 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7337940..7338892 958..6 4440 98.6 Minus
Blast to na_te.dros performed 2014-11-28 18:18:23
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1107..1142 346..381 135 86.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2373 346..381 126 83.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1529..1588 328..385 123 71.7 Plus
roo 9092 roo DM_ROO 9092bp 1094..1130 345..381 122 81.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6729..6761 349..381 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6750..6782 349..381 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6771..6803 349..381 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6804..6836 349..381 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6824 270..381 116 62.6 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 886..1005 258..381 116 56.5 Plus
roo 9092 roo DM_ROO 9092bp 1077..1108 349..380 115 84.4 Plus
roo 9092 roo DM_ROO 9092bp 1089..1121 349..381 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2350..2382 349..381 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6857 241..381 111 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6783..6815 349..381 111 81.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2815..2864 346..393 110 72 Plus

UFO12450.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:56 Download gff for UFO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RB 92..1102 1..1006 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:02 Download gff for UFO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RA 261..1271 1..1006 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:03 Download gff for UFO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
eco-RA 261..1271 1..1006 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:03 Download gff for UFO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7337887..7338897 1..1006 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:02 Download gff for UFO12450.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7330987..7331997 1..1006 97   Minus