UFO12450.5prime Sequence
1039 bp (912 high quality bases) assembled on 2012-10-19
> UFO12450.5prime
GTCGACATGGAGACCCCGACGGGTAGTGGGCGTCCCAGTCGCATGGCCAC
TCCGCGCCTTTCGGAGCGCAAGCGGCAACTGTTTGGCAGTCCCAGATCCA
GGCTGCGCCAAATCAACGACGACGAGGATGATGCGGACGTAGACAGTCTG
GGTGTCTTGCCATTAAAGACCCATGTGGCGGCCAACAGGAAGGGCAGGAG
TCTCTTCGCCGCAGTCCCCGGCAAGTCAAGCAGCAGTGCGAACAGCAGCC
CGGAAACCAACAAGGAGAACAAAAAAACCCGTGGCGGAGTCATGACTGCC
ACGGCGGAGCAGCTGCCCCAATTGTTTACAGCCACCATGCGGCTAAATAG
CAACAGCAGCAGCAATAGTCGCAACAGCAGCCCCCGTCAGACGAGGGTCC
AAAGAAAGCGAGCGGATTCTTCAATGTCGTCGCCCACCTCTTCCTCTGAA
GGAACTCCTTCTTCCAGAGCCAGAAATAGCATCAGACGCAGTCCACGAAC
CTTCAGTGCGCAAAAGGATCCAGATGCGTTCTCCTCGCCAGAATCTTTTC
AGACTAGGCTAAGCAAGGTGGCAGCTATGCTAATGAAGGGTCAGGATTCA
AGATCAATGTTAGAAAAATCAAAGAAGAAACACAACCACAGCCTAAAGAC
CACTGCCCAAGTGCATACAACTAAACCGAAGAAAACGAGCCCAGCTGAAG
AGTCCCAGTCGGACGACGAGAAACCTTCTAGCAGTAAGAACTCCAGGAAG
AATACAGAAGTTCGTGAAACAAGGAGCTCGCAAATCATCAGTCCAAAAAC
CAGGAATAGACGAAGACCCTTCACGTCGGCGGATTATAAACTGCAAGACG
CTGAAGGCTGCTGCCCATCTACATGAGATATGAGGTCCGTATGATGAGAA
AAAACAGCAGCAGTTTGGCTAGAAAACATCAGAAGCAGATCCAGTCCCCG
GGTAGAAGGTGTCAGTCCAAGACGATGCAGTAAACGAAACTGGGAAACCC
AACAATTAATACATGCGAATTCTTCCGAAAGTTTGCCAC
UFO12450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
eco-RB | 3485 | CG8598-RB | 97..1123 | 6..1029 | 4640 | 97.6 | Plus |
eco-RA | 3654 | CG8598-RA | 266..1292 | 6..1029 | 4640 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7337940..7338892 | 958..6 | 4440 | 98.6 | Minus |
Blast to na_te.dros performed 2014-11-28 18:18:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1107..1142 | 346..381 | 135 | 86.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2373 | 346..381 | 126 | 83.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1529..1588 | 328..385 | 123 | 71.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1094..1130 | 345..381 | 122 | 81.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6761 | 349..381 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6782 | 349..381 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6771..6803 | 349..381 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6804..6836 | 349..381 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6824 | 270..381 | 116 | 62.6 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 886..1005 | 258..381 | 116 | 56.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1077..1108 | 349..380 | 115 | 84.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1121 | 349..381 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2350..2382 | 349..381 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6857 | 241..381 | 111 | 59 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6783..6815 | 349..381 | 111 | 81.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2864 | 346..393 | 110 | 72 | Plus |
UFO12450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:56 Download gff for
UFO12450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RB | 92..1102 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:02 Download gff for
UFO12450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 261..1271 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:03 Download gff for
UFO12450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
eco-RA | 261..1271 | 1..1006 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:03 Download gff for
UFO12450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7337887..7338897 | 1..1006 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:02 Download gff for
UFO12450.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7330987..7331997 | 1..1006 | 97 | | Minus |