UFO12451.5prime Sequence
1130 bp (1024 high quality bases) assembled on 2012-10-19
> UFO12451.5prime
AGTCGACATGCGAATTTTGTGGATTGCAGCTATATCGTTCTCGTGGCAAT
TTTCAGACGCCTTTTATTATATGCCCAAATTTCTTTGCATTCCACCATTT
GTGGCCATTAATGGAAGCTGCCTTATTCCAACCCCCAAAGAACCCACGAT
ATTGCCCTGTTTGAAAAACCTTCAAAACTCCACGGTGTTTCCGGAAAATC
GTGAAATAGTTACCGTTAGTCCCCCGAATTTAATAACGGAAGATGGTGCT
ACTATCGGAGAAAGCCATTCTAAAGATGAAAAGCCTAATCTTTCTATCAA
AGTACCAGTAAAGGAAGCAGGAGCAGTTGAAGGCGATAAGACAAACGAAG
ATTTAAATCCGACCGTCCCTAATGCAAATAAAGTGCCTACTGATAGTTCG
GAAAATACCTTAGATTCGGAACCCAATGACAATTTTGTTGGTAAGCCCGA
AGACTCCAATCAAAACGAAAGTAATCCGGATATTATAACACCGAGTCAAC
ATGCAAATTCGAGCATAATTTCAACAAACCAAGGACAAGAAACAAATGAA
AGCAACATTCCGGAAAAAGGATCTAATACAGACAGTAAATTAAAACCGAC
AATTTCGGAAGATTCCCAAGTAAATAATATACCCCCGAAAGAAGGAGCAT
TTCAAGGCGATAATACAAATAAAGATTTAAATCCGACGGTTCCTGATGAG
AGTAATGTACCTACTGAAAGTTCAGAAAATACCTCAGATTCGGAATTCGA
TGACAACAATATTGGTAAGCCCGAAGACTCCGATCAAAACGAAAGTAATC
CGGATATTGTAACGCCGAGTCAACATGAAATTCGAGTCTAATTTCAACAA
ATCATGGACAAGAAACAATGAAAGCAACCTTCCAGAAATGGATCTAATAA
AGGCAGTAAATTAAACTGCCTACTCCGGAAAATTCCCAAATAAATCAAAC
ACCTCCGGAAGCAGGAGCAGTCAACCAGATTTAATCCGACGTTCCTGATG
CTATTAATTGGCCTACTGAAAGTTCAGAAATGCCTTAGAATCGAGTTCAT
TGCCACCATTGTTGTAGCCCGAAGACTCCATCAACGAGGTAATCCGATTT
TATAACCGAGTTACCTGGAATTCGAGCCTA
UFO12451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30395-RB | 2870 | CG30395-RB | 47..1193 | 4..1130 | 5045 | 97 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 682..1327 | 315..971 | 1575 | 83.4 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 1020..1536 | 344..868 | 950 | 79.3 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 358..692 | 639..969 | 840 | 84.2 | Plus |
| CG30395-RB | 2870 | CG30395-RB | 1313..1539 | 313..548 | 345 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21765747..21765907 | 154..314 | 805 | 100 | Plus |
| 2R | 25286936 | 2R | 21765535..21765685 | 4..154 | 740 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21766103..21766235 | 361..493 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 21766635..21766767 | 685..817 | 665 | 100 | Plus |
| 2R | 25286936 | 2R | 21766291..21766396 | 493..598 | 530 | 100 | Plus |
| 2R | 25286936 | 2R | 21766491..21766578 | 598..685 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 21767109..21767241 | 361..493 | 440 | 88.7 | Plus |
| 2R | 25286936 | 2R | 21767109..21767241 | 685..817 | 425 | 88 | Plus |
| 2R | 25286936 | 2R | 21766823..21766926 | 493..596 | 370 | 90.4 | Plus |
| 2R | 25286936 | 2R | 21766823..21766924 | 817..915 | 360 | 97.1 | Plus |
| 2R | 25286936 | 2R | 21766121..21766235 | 703..817 | 350 | 87 | Plus |
| 2R | 25286936 | 2R | 21766653..21766767 | 379..493 | 350 | 87 | Plus |
| 2R | 25286936 | 2R | 21766981..21767040 | 918..977 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 21765999..21766048 | 312..361 | 250 | 100 | Plus |
| 2R | 25286936 | 2R | 21766291..21766392 | 817..915 | 225 | 88.2 | Plus |
| 2R | 25286936 | 2R | 21767297..21767402 | 493..598 | 215 | 80.2 | Plus |
| 2R | 25286936 | 2R | 21767476..21767521 | 926..971 | 185 | 93.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:28 has no hits.
UFO12451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:57 Download gff for
UFO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 9..1118 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:04 Download gff for
UFO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 45..1154 | 1..1096 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:05 Download gff for
UFO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30395-RB | 45..1154 | 1..1096 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:05 Download gff for
UFO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21766636..21766767 | 686..817 | 100 | -> | Plus |
| 2R | 21766824..21766928 | 818..918 | 96 | -> | Plus |
| 2R | 21766982..21767053 | 919..988 | 97 | -> | Plus |
| 2R | 21765533..21765685 | 1..154 | 98 | -> | Plus |
| 2R | 21765748..21765906 | 155..313 | 100 | -> | Plus |
| 2R | 21766001..21766048 | 314..361 | 100 | -> | Plus |
| 2R | 21766104..21766235 | 362..493 | 100 | -> | Plus |
| 2R | 21766292..21766396 | 494..598 | 100 | -> | Plus |
| 2R | 21766492..21766578 | 599..685 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:04 Download gff for
UFO12451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17654141..17654272 | 686..817 | 100 | -> | Plus |
| arm_2R | 17654329..17654433 | 818..918 | 96 | -> | Plus |
| arm_2R | 17654487..17654558 | 919..988 | 97 | -> | Plus |
| arm_2R | 17653038..17653190 | 1..154 | 98 | -> | Plus |
| arm_2R | 17653253..17653411 | 155..313 | 100 | -> | Plus |
| arm_2R | 17653506..17653553 | 314..361 | 100 | -> | Plus |
| arm_2R | 17653609..17653740 | 362..493 | 100 | -> | Plus |
| arm_2R | 17653797..17653901 | 494..598 | 100 | -> | Plus |
| arm_2R | 17653997..17654083 | 599..685 | 100 | -> | Plus |
