UFO12455.5prime Sequence
873 bp (852 high quality bases) assembled on 2012-10-19
> UFO12455.5prime
AGTCGACATGACCACGTCGGCGTCCTTGGAGAGGACCCCCTCAAAGCGGG
ATCGAGATCGCGAGCGGGACAACAGCAGCGGTCTGGGCAGCGCTGGCAGC
TTGCCCGCATCGCCCCAAAGCGCTATCACGGTGAGTCCGTCCTCCCCAGC
CACGCCGAAGCGCCCGCTGCGCACCTCAACGCCCTCGCTGGAGCGGAAGA
GGGAGCGTGAGGATCGAGAGGACCGGGAGGATCGCAAGGAGCGGCAGGAA
CGGCACGAGCGAGACAGAGATCACGAGAGATTCGCCGCAGTCTTCAGCAC
CGCCAGCACCACCGTGCCCACGAACACAAGTTCCAGTTCCGGATTGGCGC
CCGAACAGCTCCGCATTCCGACGGGTGCAGCCGCCTTCAGCGGATTTCCG
GGGCTCCACAGCATGAGTAGTCTTATGCTTCCATCGTCGGCGGCTGTGGC
CGCCGCAGCAGCGGCCCCGTTTCTGCCCTGGTCGCCCATCCTGCTGCCGC
CGTGGAACCACGCCCTCCTACCAGCCGCCTTTTATCCGGCGGCCCTGCGA
AACGCTTTGCCTGGCTTATTCGATGCAAAGGTGCCGTCGTCCCAACGCTC
TGGCTTCCATATATCGGACATCTTGAATTTGGAGGGCTCTGAGCTGAAGA
ATGCAGCAGCTGCCGCCGCTGCTGCCGCCCACCATGGCAGCGATTTGAGT
CACCACTCTGCCAGTGAGTCCACCAGTGGAACATCGCGGCCAGGGATCTC
ACACCTCGCCTTTCGGCGCTGTCGCCCAACGCCAGCGGGCGTTTTCCGCG
GACGAGCACCACAATGGCAGCGTGACTGGGGGAGGAGCGGGAATAAGCGA
ATCCCACTCTCCACCGAGCATCT
UFO12455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnd-RA | 3033 | CG6172-RA | 350..1215 | 4..872 | 4075 | 98.4 | Plus |
| vnd-RB | 3412 | CG6172-RB | 958..1262 | 565..872 | 1285 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 591391..591951 | 4..564 | 2790 | 99.8 | Plus |
| X | 23542271 | X | 593647..593921 | 564..842 | 1165 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:38 has no hits.
UFO12455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:58 Download gff for
UFO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 348..1215 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:10 Download gff for
UFO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 348..1215 | 1..873 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:09 Download gff for
UFO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnd-RA | 348..1215 | 1..873 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:09 Download gff for
UFO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 591389..591951 | 1..564 | 99 | -> | Plus |
| X | 593648..593935 | 565..857 | 96 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:10 Download gff for
UFO12455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 485422..485984 | 1..564 | 99 | -> | Plus |
| arm_X | 487681..487968 | 565..857 | 96 | <- | Plus |
