UFO12456.5prime Sequence
1041 bp (942 high quality bases) assembled on 2012-10-19
> UFO12456.5prime
AGTCGACATGAGTAATCTGAAACAAAAGGATAGCAAGCCGGAGGTGGCAG
TAACAAAATCAGTGAAAACCTATAAAAAATCAATTGAATATGTTAATTCC
GACGCCTCCGACATTGAAGAAGATATCAATAGGGCAGAGGACGAATACGC
CTCATCGTCTGGCTTTGTTAATTTTCTGAGGGACTTTAAGAAGCGCTACG
GAGAATATTACTCGAATAACGAGATAAGACGGGCTGCTGAAACCCGATGG
AACGAAATGTCATTCCGTCATCGATGCCAGTATTCTGCGGAACCATTGGA
CACTTTTCATGTAGAGCCCAACAGTGTGAGCAGTCTTCAGCGTTCTAGTG
AGGGCGAGCACAGAATGCACTCTGAAATAAGTGGCTGCGCAGACACTTTC
TTCGGTGCCGGTGGCTCCAATAGCTGCACTCCAAGAAAGGAGAACAAGTG
TTCCAAGCCCAGGGTGCGGAAGAGTTGCCCCAAACCACGGGCGAAAACCT
CGAAGCAACGTCGCAGTTGCGGCAAACCGAAGCCCAAGGGCGCCCGACCC
CGGAAGGCATGTCCCCGCCCCAGGAAGAAGATGGAATGCGGCAAGGCGAA
GGCAAAGCCAAGGTGTCTTAAGCCCAAGAGTTCCAAGCCCAAGTGCTCGA
TGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGT
CATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATC
CTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGC
AACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGGAT
CTATCAACAGGAGTCAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCC
ACTCATCGCAGTACTGTTGTAATTCATAAGCATTCTGCGAATGAAGCATC
CACAACGGCATGATGAACCTGATCGCAGCGCATCAGCATCTGTCGCCTTG
CCTATAAATTTGCCCATGTGAACGGGGGCGAAAATTGTCTA
UFO12456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mst77F-RA | 1065 | CG3354-RA | 150..794 | 8..652 | 3210 | 99.8 | Plus |
| Mst77Y-9-RA | 660 | CG45769-RA | 16..654 | 8..649 | 2465 | 92.4 | Plus |
| CG45764-RA | 942 | CG45764-RA | 147..785 | 8..649 | 2465 | 92.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20817172..20817535 | 652..289 | 1805 | 99.7 | Minus |
| 3L | 28110227 | 3L | 20817596..20817878 | 290..8 | 1415 | 100 | Minus |
| Y | 3667352 | Y | 3341184..3341540 | 289..649 | 1390 | 93.6 | Plus |
| Y | 3667352 | Y | 3289701..3290058 | 289..649 | 1365 | 92.5 | Plus |
| Y | 3667352 | Y | 3358926..3359280 | 291..649 | 1365 | 93.3 | Plus |
| Y | 3667352 | Y | 3285354..3285711 | 289..649 | 1350 | 92.2 | Plus |
| Y | 3667352 | Y | 3302187..3302544 | 289..649 | 1350 | 92.2 | Plus |
| Y | 3667352 | Y | 3336760..3337117 | 289..649 | 1350 | 92.2 | Plus |
| Y | 3667352 | Y | 3371242..3371596 | 291..649 | 1350 | 93 | Plus |
| Ymm | 880023 | Ymm | 515762..516116 | 649..291 | 1350 | 93 | Minus |
| Y | 3667352 | Y | 3293966..3294323 | 289..649 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3350011..3350368 | 289..649 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3354465..3354822 | 289..649 | 1335 | 92 | Plus |
| Y | 3667352 | Y | 3297764..3298120 | 289..649 | 1330 | 92.5 | Plus |
| Y | 3667352 | Y | 3327916..3328273 | 289..649 | 1320 | 91.7 | Plus |
| Y | 3667352 | Y | 3332337..3332693 | 289..649 | 1315 | 92.2 | Plus |
| Y | 3667352 | Y | 3319090..3319436 | 289..649 | 1150 | 89.2 | Plus |
| Y | 3667352 | Y | 3323503..3323849 | 289..649 | 1150 | 89.2 | Plus |
| Y | 3667352 | Y | 3336415..3336697 | 8..290 | 1100 | 92.6 | Plus |
| Y | 3667352 | Y | 3289355..3289637 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3293621..3293903 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3301842..3302124 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3318745..3319027 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3323158..3323440 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3327571..3327853 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3349666..3349948 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3354120..3354402 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3358586..3358868 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3370902..3371184 | 8..290 | 1085 | 92.2 | Plus |
| Y | 3667352 | Y | 3297419..3297701 | 8..290 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3340839..3341121 | 8..290 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3345262..3345544 | 8..290 | 1055 | 91.5 | Plus |
| Y | 3667352 | Y | 3376297..3376579 | 8..290 | 1025 | 90.8 | Plus |
| Y | 3667352 | Y | 3345663..3345944 | 365..649 | 1015 | 91.2 | Plus |
| Y | 3667352 | Y | 3285012..3285291 | 8..290 | 1005 | 91.2 | Plus |
| Y | 3667352 | Y | 3331995..3332274 | 8..290 | 1005 | 91.2 | Plus |
| Y | 3667352 | Y | 3364784..3365040 | 393..649 | 1000 | 92.6 | Plus |
| Y | 3667352 | Y | 3376698..3376978 | 365..649 | 950 | 90.5 | Plus |
| Y | 3667352 | Y | 3364536..3364742 | 8..217 | 715 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:46 has no hits.
UFO12456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:59 Download gff for
UFO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst77F-RA | 167..820 | 1..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:15 Download gff for
UFO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst77F-RA | 144..797 | 1..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:12 Download gff for
UFO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mst77F-RA | 144..797 | 1..656 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:12 Download gff for
UFO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20817169..20817534 | 290..656 | 99 | <- | Minus |
| 3L | 20817597..20817883 | 1..289 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:15 Download gff for
UFO12456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20810269..20810634 | 290..656 | 99 | <- | Minus |
| arm_3L | 20810697..20810983 | 1..289 | 98 | | Minus |
