UFO12457.5prime Sequence
1026 bp (911 high quality bases) assembled on 2012-10-19
> UFO12457.5prime
AGTCGACATGCGGCAAGGATCTGTTGTTATCTACCTAGGTTTGTTGGCTT
TCATTGCAATTGTCGATTGCCAGGAAAACAATAATCTCGTGTCCATAGTA
ACCGACCACTCTATACAATGCCCACCATTTGACGATCCCAACCATAATGT
GATGTTGCCATATCCCAATGACTGTAGCAAGTATTACGTATGCCAAAAAG
GACGAGCCTATGAGCAACAGTGTCCTCTGAATTTGTTCTGGAGCCAGATG
ACCTACCGCTGTGACTACAAGGAGTACTCCAACTGCAATACGTATATTCC
AAGTCCCAACCATGATGTTGAGGTCATATTTAGTGCATATCCCGGAGATT
GCAGGCGATTCTACGAGACACGTATCCTTCGCTGTGAGCAAAACCTCCAG
TGGAGTTCAGTATACCAGAGATGCGTTGTCCCACAGTATGGCGATTGTCA
GAACTCTCCTGTGACCGTGCCACCCGTAGTCCCCTTTACCCCACTGCCTA
CCTATCCACCCGTTCCAACCGTTCCCGCAACCGTGATACCTTATGATCCC
ATGCCCACCGCTGGTACTCCACCGCCTATAACTCCCATGGAATCTTTACC
TCTGCCAATTGACGTCCAATCATTGTGCAATAACAGTCCTCCCAATGCGT
ACATTCCTTATCCGGGCAGTTGTAAGAAGTTTATACATTGCGGACCAACA
GCAACCATTCTTTCATGCGCATGCTCCTCGAATTGGAAATCCTGCCCAGC
ATGCCTGCACCACTTACAGCAATGGGTGCCAGGCTTCTTTAAATGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATATCACACTAGCCCTAGGAGATCCTGTGATGA
CTAGTGCTTGATTCTCACCAATAAAAACCTCGCGCAACGAGCGTTCTGAC
AAATCAGATGAGTTTCTGAGTCATTACTGATTCTATCACAGAGTTCAGCG
AGCCTCGAATATCAAATAACGCCCGC
UFO12457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11570-RB | 936 | CG11570-RB | 42..827 | 8..794 | 3895 | 99.7 | Plus |
| CG11570-RA | 909 | CG11570-RA | 16..800 | 9..794 | 3890 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11956817..11957519 | 794..91 | 3455 | 99.7 | Minus |
| 3L | 28110227 | 3L | 11957580..11957662 | 91..9 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:52 has no hits.
UFO12457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:00 Download gff for
UFO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RA | 1..678 | 119..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:19 Download gff for
UFO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 36..831 | 1..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:16 Download gff for
UFO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11570-RB | 36..831 | 1..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:16 Download gff for
UFO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11956812..11957518 | 92..798 | 99 | <- | Minus |
| 3L | 11957580..11957662 | 9..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:19 Download gff for
UFO12457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11949912..11950618 | 92..798 | 99 | <- | Minus |
| arm_3L | 11950680..11950762 | 9..91 | 100 | | Minus |
