UFO12458.5prime Sequence
1056 bp (920 high quality bases) assembled on 2012-10-19
> UFO12458.5prime
AGTCGACATGCCGGCGGAAATTAAACCATCCGCGCCCGCTGAGCCGGAAA
CGCCGACCAAGAGCAAACCCAAGTCCAGCTCATCCTCGCACGGAAAGCCT
GCCCTAGCACGAGTCACCCTGCTGGATGGCTCCCTTCTGGACGTGTCCAT
TGATCGCAAAGCCATTGGCCGTGATGTGATCAACTCAATCTGCGCCGGTC
TGAACCTCATCGAAAAGGACTACTTTGGTCTGACCTATGAGACGCCCACA
GATCCGCGCACTTGGCTGGATCTGGAGAAGCCGGTATCCAAGTTCTTCCG
CACGGACACTTGGCCTCTCACCTTCGCCGTCAAGTTCTATCCGCCGGAGC
CATCGCAGCTGAAGGAGGACATCACGCGCTACCATTTGTGCCTGCAGGTG
CGCAATGACATCCTGGAGGGTCGACTGCCCTGCACATTCGTCACCCACGC
TCTGCTCGGATCCTACTTGGTGCAGTCGGAGATGGGCGACTACGATGCAG
AGGAAATGCCCACCAGGGCCTACCTGAAGGACTTCAAGATCGCTCCAAAT
CAGACGGCTGAGTTGGAGGATAAGGTCATGGATCTTCACAAGACCCACAA
GGGACAATCGCCCGCCGAGGCTGAGCTACACTACCTGGAGAATGCCAAGA
AGCTGGCCATGTACGGCGTGGACTTGCATCCCGCTAAGGATTCTGAGGGC
GTGGACATCATGCTGGGCGTTTGTGCCTCCGGTTTGCTCGTCTACCGCGA
TAAATTGCGCATCAACCGCTTTGCCTGGCCCAAGATTCTGAAAATCTCCT
ACAGCCGCCACCATTTCTACATCAAGATCCGACTGGGGTGAATTCGAGCA
GTACGATCCCACCATTGCTTTAAAGCTGGCAACCATCGTGCCCGCCAGAA
ACTGTGGAAATCCTGCTTGAACCACCACACCTTCTTCCGGCTGATGACCC
CGAACCGGTCAGCAAGTCTCAGATGTTCCAGGCTTTCGGGTCCCACTTAT
CGCTACAAGGGTCGCACTCCGGCCCGAAAGACCGAACCACCCCCTGGGAT
ACGAAC
UFO12458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cora-RG | 5893 | CG11949-RG | 372..1388 | 8..1024 | 4635 | 97.6 | Plus |
| cora-RF | 5605 | CG11949-RF | 372..1388 | 8..1024 | 4635 | 97.6 | Plus |
| cora-RE | 2902 | CG11949-RE | 372..1388 | 8..1024 | 4635 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19235763..19236209 | 155..601 | 2235 | 100 | Plus |
| 2R | 25286936 | 2R | 19236485..19236755 | 754..1024 | 805 | 89.7 | Plus |
| 2R | 25286936 | 2R | 19236267..19236419 | 601..753 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 19235516..19235662 | 8..154 | 735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:18:11 has no hits.
UFO12458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:53 Download gff for
UFO12458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RC | 362..1398 | 1..1037 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:53 Download gff for
UFO12458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 364..1400 | 1..1037 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:55 Download gff for
UFO12458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cora-RE | 364..1400 | 1..1037 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:55 Download gff for
UFO12458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19235508..19235662 | 1..154 | 97 | -> | Plus |
| 2R | 19235763..19236208 | 155..600 | 100 | -> | Plus |
| 2R | 19236267..19236419 | 601..753 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:53 Download gff for
UFO12458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15123772..15123924 | 601..753 | 100 | -> | Plus |
| arm_2R | 15123013..15123167 | 1..154 | 97 | -> | Plus |
| arm_2R | 15123268..15123713 | 155..600 | 100 | -> | Plus |
