UFO12460.5prime Sequence
971 bp (916 high quality bases) assembled on 2012-10-19
> UFO12460.5prime
AGTCGACATGTTCTACCTAATCGGCCTCGGCCTTGGCGACCTGAAGGACA
TCACGGTCAAGGGTCTGGAGATAGTGAAGCAATGCAGTCGCGTCTATCTG
GAGATGTACACCTCGATTCTGGGCTGCAGCCTTGAGGATATGCAAGAGTT
CTATGGACGACCACTGCTGCTAGCCGACCGCGATCTGGTGGAGCAGGGTG
CGGATGAGATCCTGGCGGGTGCGGGCGAATCCGATGTTGCGCTGCTCGTG
GTGGGCGACCCCTTTGGCGCCACCACCCACACAGACTTCATACTGCGCGC
CAAGGAGAAGAACATCCCCTACAAGGTCATCCACAATGCATCGATCATGA
ACGCCGTCGGCTGCTGCGGCCTGCAATTGTACAAATTCGGCGAGACCGTT
TCGATTCCGTACTGGGACGAGACATGGAAGCCGGACAGCTTCTACGACAA
GATCAAGCTGAATCGCCTGCACAACATGCACACGCTGTGCCTGCTGGACA
TCAAGGTGAAGGAGCCCACGCCGGAGTCCTTGATGCGCAAACGCAAGGAG
TACATGCCACCGCGTTTCATGACCGTGGCGGAGGCGGCTCATCAGTTGCT
GTCCATTGTGGAGAAGAAGGACTCGCTGGAGAAGAACACAGTGCTCAACG
AGCAGTCACTGTGCGTTGGACTGGCCCGTGTTGGCCAGGAGTCGCAGCAG
ATTGCCGTTGGCACGCTGCTTGAGATGCGCTCGACCGATTTGGGCGGACC
GCTGCACTCGCTCATCATTCCCGCCAAGGAGATGCATCCGCTGGAGGTGG
AGTTCTTGCAGCAGTATGCCCCCAGCATTAAGCTGGACGACTACAACCAC
GCAAGCTTTCTAGACCATTCGTTTGGCGCGGCGGGCCCATGTAAGGTGTC
ATAATCATATCATAATCATCATTCAATTATCACACTAGCCTAGGAGGATC
TTGGTTCATGACTAGGTGCCT
UFO12460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dph5-RA | 1128 | CG31289-RA | 105..948 | 7..850 | 4205 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22582208..22582916 | 850..142 | 3530 | 99.9 | Minus |
| 3R | 32079331 | 3R | 22582986..22583121 | 142..7 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:17 has no hits.
UFO12460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:54 Download gff for
UFO12460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 98..956 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:51:58 Download gff for
UFO12460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 95..953 | 1..858 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:00 Download gff for
UFO12460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dph5-RA | 95..953 | 1..858 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:00 Download gff for
UFO12460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22582200..22582915 | 143..864 | 98 | <- | Minus |
| 3R | 22582986..22583123 | 1..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:51:58 Download gff for
UFO12460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18407922..18408637 | 143..864 | 98 | <- | Minus |
| arm_3R | 18408708..18408845 | 1..142 | 97 | | Minus |
