UFO12461.5prime Sequence
1065 bp (843 high quality bases) assembled on 2012-10-19
> UFO12461.5prime
AGTCGACATGCGTTTAACGCAATATTTGGCCAGCAAGTTGAAGAACTTTT
CCAATCTGCCCAAGGAATACATCGAGCGCAGCAAAAAACAGGTGTACTGG
CAAACTCCGAAGGAGATTAATTACCTACCGCGTACCGTGGAGCGAAAGAG
ATTCCGCTACACCACAAATCGTTCATGGACGGGTCAGTTCCGCCAGCAAA
ATATGCCCGGAACCGTGCGTCGCAAGGTGCTAGTGGAACCAATTGAGGAC
TGGAGCTTTTTCCGCGGCGATCGTATCGAAGTCCTTGTGGGTAAAGACAA
AGGAAAGCAGGGAATTGTCACCCAGGTTATACCCGAGCGCAATTGGGTAA
TTGTAGAGGGCCTGAACTGGCACTATCGCAAGGTTGGCGGTGAGAAGGAG
TTTCCCGGTATCATTATCAAGTCCGAGGCACCTTTGCACGTCACCAAGGA
CATTCGTCTGGTTGACCCATCGGATCTTCAGGGCACCGACTTTGAGTGGC
GTTTCACGGAGGAGGGCGAGAAAGTGCGGGTGTCCTTGCGATCTGGCCGA
ATCATACCCATCCCGGAGACGAACAACCAGACGCACGATTATAAAACACC
AAACGCCTATATCGAAAGGGAGAAGGATACGCCAGGCGCTGTTGTGGGCG
AGATCACCTTTCAGCCCAAGTTGTCCACATTCGAGATGGACATTATGGAG
GAAATGGGGCATCAAAGAGGAACGCACGCCAGTCAAGAGCTATTGGTACG
CAAGCTGTTCTAGACCATTTCGTTTTGGCGCGCGGGCCCAGGTTGAGTGG
TCATAATCATAATCATATTCATAAATCATAATTCACAACTAGCCTAGGGA
GATTCCTGGTCATGACTTAGTGCTGGGATTCCTCATGAATAAAAAACGCC
CCGGGCGGCAACCGAGCGTTCCTGAACAATTCCAGATGGGAGTTCTGAAG
GTATTTACTGGAATGTATCAACATGAAGTCCAAGCGAGCTTCAATATCTT
ACTACGCCCCCGCCCTGCCACCCCTCCCGAGACCTGGTGGGTGTCCTTAA
TCATCTGTCCGTGTG
UFO12461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL24-RA | 875 | CG8849-RA | 87..827 | 8..749 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4944474..4944865 | 636..245 | 1960 | 100 | Minus |
| 2L | 23513712 | 2L | 4944927..4945084 | 245..88 | 790 | 100 | Minus |
| 2L | 23513712 | 2L | 4944304..4944419 | 749..633 | 535 | 99.1 | Minus |
| 2L | 23513712 | 2L | 4945190..4945275 | 93..8 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:14 has no hits.
UFO12461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:03 Download gff for
UFO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 62..816 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:31 Download gff for
UFO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 80..834 | 1..759 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:28 Download gff for
UFO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL24-RA | 80..834 | 1..759 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:28 Download gff for
UFO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4944297..4944416 | 636..759 | 95 | <- | Minus |
| 2L | 4944475..4944864 | 246..635 | 100 | <- | Minus |
| 2L | 4944927..4945080 | 92..245 | 100 | <- | Minus |
| 2L | 4945192..4945280 | 1..91 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:31 Download gff for
UFO12461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4944297..4944416 | 636..759 | 95 | <- | Minus |
| arm_2L | 4944475..4944864 | 246..635 | 100 | <- | Minus |
| arm_2L | 4944927..4945080 | 92..245 | 100 | <- | Minus |
| arm_2L | 4945192..4945280 | 1..91 | 95 | | Minus |
