UFO12462.5prime Sequence
1061 bp (941 high quality bases) assembled on 2012-10-19
> UFO12462.5prime
AGTCGACATGGCGAAAATGGCATTCCAGCACCAGGCCGGCACGGCGATGG
AGTGCTTGAGCATTCCCATCACGCTGCACAAGGAGAAGGACTACGACCAG
GAGGGGCGCGAGATCCTCAAGTGCGGCTTCAAGATCGGCGGCGGAATCGA
CCAGGACTACAAGAAAAGCCCTCAGGGATACACGGATTATGGCATCTATG
TGACCGAGGTGCACGAGGGCAGTCCCGCCGCCCGAGCAGGTCTGCGGATC
CACGACAAGATCCTGCAGTGCAACGGCTACGACTTCACCATGGTCACCCA
CAAAAAGGCCGTGAGCTACATCCGGAAAAACCCGATACTCAACATGCTGG
TGGCCCGCAAGGGCGTGACCTCCACAGCAAGCTTTCTAGACCATTCGTTT
GGCGCGCGGGCCCAGGTAAGTGGTCATAATTATTATCATAATCATAATCA
TAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGA
TGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCT
CGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAAC
CTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGC
CCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAA
TCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAACATATTC
TCAATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCAC
ATTCTTGCCGAATATATGTGTAAGAAACTGCCGGAAATCGTCGTGTATTC
ACTCCAGAGCGGATGAAAACGTTTCAGTTTGCTCATGTAACGGGTGTAAC
ATGATGAACCTATCTCATATCACAGCTCACCGGTCTTTCATTGCCATACG
AATTCCCGATG
UFO12462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3402-RA | 1035 | CG3402-RA | 115..486 | 5..376 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 652091..652276 | 376..191 | 930 | 100 | Minus |
| 3L | 28110227 | 3L | 652443..652572 | 191..62 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 652711..652767 | 61..5 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:17 has no hits.
UFO12462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:04 Download gff for
UFO12462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3402-RA | 64..443 | 1..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:33 Download gff for
UFO12462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3402-RA | 111..490 | 1..381 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:30 Download gff for
UFO12462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3402-RA | 111..490 | 1..381 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:30 Download gff for
UFO12462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 652091..652276 | 191..376 | 100 | <- | Minus |
| 3L | 652444..652572 | 62..190 | 100 | <- | Minus |
| 3L | 652711..652770 | 1..61 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:33 Download gff for
UFO12462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 652091..652276 | 191..376 | 100 | <- | Minus |
| arm_3L | 652444..652572 | 62..190 | 100 | <- | Minus |
| arm_3L | 652711..652770 | 1..61 | 96 | | Minus |
