UFO12463.5prime Sequence
1061 bp (815 high quality bases) assembled on 2012-10-19
> UFO12463.5prime
AGTCGACATGAACTTCCCACTGGCGAGCGTCAACAAGGATACGTTGCGGG
CTGCCTGCAAGAAATGCGGCTACGCCGGTCACCTGACCTACCAATGCCGC
ATTTTTCTCAAGGTGGACCCCAACAAGGAGATCCTGCTGGATGTGGAGAG
CACCAGCTCAGACTCGGAGCTGGACTACCTTACGCCGCTCACCGAACTGA
GAGCCCAGGAGCTGAAGAGTGGCGCTGAGGTGCCGCCGCCAACGGAGCCA
GCGGTGCTTCCCGCGGCAGGCAAACGGGACAGGAGCAAGGACAAGAGCCG
CGACAGGCTCAAGGCGAAGAAGCGGGAAAGGGAGCGGGAGAGAGAGAAGG
TGAAGGAGAAAGAGAAGGAGAAGGGTAGCCGGAGCATGGACAAGAAGCGT
AGCCACTCAAAGAGCAGCCACAAGCTGGCCGAGAAGAGCAAGGACAAGAA
GTCGGTGCGGCACAAGAAGCATGGCAAGAAGAGGAGCCGGAAGCACAAAA
AGACCACAAACACCAACAATAGCAGCAGCAACAGCAGCAGCGAGCTGGCC
AAAACCAAAACAGGCAAGCGACCGAGCAGCGGCAGCACCAACAAGAAGTC
AAAACGACGACGATCTTCCTCCACCTCTAGCTCGGATTCGTCGTCGTCGT
CGTCGTCCTCCTCCTCCTCCTCGTCATCAACCAGCAGCTCATCGTCGTCA
TCGAGCGATGATTCGAGTGATGATTCCTCCACATCGAGCGATTTCTTCTG
AATCGTGATTCCAGCGACAACGAGGAGTCTCAGCACCAGTGAAATCGGAT
GAGTACGGACGCAAGATGAAGCGGCAGGGCCAGTTCAATCCGCAAGTCCA
CGGACACGGCCTTGCTGCGACGTAAGAAGACCAAAGCCGAATCGGAAAGC
GACATCGTTGCCGGCGGATCCCGGTGCTTCGTACCGCCGGCAGCAGCTTC
CTTGAACCATGCCTCTGCGACTAGTCAGCCTCCTTACGCAAGCTTTTCTA
TGATCCTTTCGTTTTGGGCGCTGCGCTGTCCCCGTGTATATTGTTTCTAT
ATCTATATCCA
UFO12463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3918-RA | 1808 | CG3918-RA | 226..1161 | 7..952 | 4255 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6524864..6525695 | 111..952 | 3500 | 97.1 | Plus |
| X | 23542271 | X | 6524689..6524796 | 7..114 | 525 | 99.1 | Plus |
Blast to na_te.dros performed 2014-11-28 18:19:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6901 | 413..594 | 235 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..6921 | 413..593 | 222 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6864 | 461..590 | 219 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6831 | 487..596 | 218 | 73 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6872 | 474..615 | 213 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2752..2874 | 492..608 | 203 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2196..2540 | 272..604 | 200 | 54.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2494 | 410..596 | 200 | 61.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2471 | 463..597 | 197 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2251..2434 | 420..604 | 193 | 62 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1035..1147 | 433..543 | 190 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2432 | 495..613 | 183 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6810 | 484..593 | 180 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6954 | 352..565 | 180 | 59.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1024..1157 | 479..611 | 180 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6888 | 437..596 | 176 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6861 | 457..593 | 174 | 65.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1030..1176 | 465..607 | 167 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2921 | 273..594 | 157 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1477..1592 | 435..546 | 147 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2619..2689 | 505..572 | 141 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2744..2892 | 463..611 | 140 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2754..2890 | 461..599 | 140 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2452 | 457..596 | 135 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2396 | 505..597 | 133 | 63.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 969..1034 | 499..563 | 129 | 70.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1126 | 464..543 | 127 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1025..1135 | 432..543 | 125 | 59.3 | Plus |
UFO12463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:04 Download gff for
UFO12463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 210..1162 | 1..965 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:44 Download gff for
UFO12463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 219..1171 | 1..965 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:36 Download gff for
UFO12463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3918-RA | 219..1171 | 1..965 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:36 Download gff for
UFO12463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6524682..6524794 | 1..112 | 95 | -> | Plus |
| X | 6524866..6525691 | 113..948 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:44 Download gff for
UFO12463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6418715..6418827 | 1..112 | 95 | -> | Plus |
| arm_X | 6418899..6419724 | 113..948 | 97 | == | Plus |
