UFO12466.5prime Sequence
1067 bp (914 high quality bases) assembled on 2012-10-19
> UFO12466.5prime
AGTCGACATGTTCAAGTTCGTGCTGAACGACGCCGCCAGCTACGTGCGAT
CCAATGTGCGGGAGTTCAGTTTGAATGCACTGCGTCTGCTGCCGCAACTG
CCTCAATTGAGTCCATACGATGTTAACCTTGTTCTGAGGGAGAACGAGTT
CGTTTACAACTTTCCCGTGGATGGAGTCATCCGCAGCTATGAAACAAATC
AGCTGGGATCAAACTGGCCCTGCGAGGATTCCCGCACGGAGGCCAGCTTC
CTGCACCGCAACGGCTTCATTTGTGGCATTTTCGACGGGCATGCGGGAGC
AGCATGTGGCCAAGTGGTGTCCAAGCGACTGCTTCGCTATGTTTCGGCGG
CCACGCTGCCGCGCCAGGTGCTCCGGGAGCAGATGAAGCAGGGTGCCGAC
AGCCAGTCGTTCCTCAAGTGCCACAATGACAACGTGGACTTTGTTAGCAT
GATCAAGCCCATGTACGAGGCTAGTTTCCTCAAGTATGTCAATCAATTGT
TAGAGACACCGCAACGGGATGTATCCAGTGAACTGGTGAACGCCTTCCTC
CAGCTGGATGAAGAGATCTCGCAGGAGGCTCTGACCAGCAACGATGTACG
CACCATGAACGTGGCCCTTTCTGGAGCCGTTGCCTGTTTGGTTCACATTG
AGGGACTGCAGATGCACGTGGCCAGCACGGGTGATTGTGGCGCAGTGTTG
GGCGTTCTTGATCCCCAGACGCAGCAGTGGCACTCAAAGAAGCTTAACAT
CGAACACAATGCTGACAATATGTCCGAGGTGCGTCGCATTCTGGCCGAGC
ATCCCAAGGAGGAGCATGAGACGGTGATCCGAAACTGCAGGCTGCTTAGC
CAGCTGGCGCCTGTTGCGTGCCTTTGGGGATTTTCGCTACCAGTGGTCTC
AGGAAATAATGCAGCAGAATGTCTGCCTGATGTTCGGCGGTGCATGCAAT
GCTGCCGAATTACTATACGCCACGTACCTACCGCCCCGCCCCCGAATGTC
CAGCAGCACGAATTGGGGCCAACGAACAAGGTCCTAGGTCATCGGCAGCG
CAGGTCCCCTAGGAATT
UFO12466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdp-RB | 2170 | CG12151-RB | 520..1558 | 8..1050 | 4770 | 97.8 | Plus |
| Pdp-RA | 1957 | CG12151-RA | 307..1345 | 8..1050 | 4770 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7732987..7733489 | 624..122 | 2515 | 100 | Minus |
| X | 23542271 | X | 7732488..7732882 | 1020..623 | 1525 | 94.5 | Minus |
| X | 23542271 | X | 7734017..7734132 | 123..8 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:51 has no hits.
UFO12466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:06 Download gff for
UFO12466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 265..1303 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:51 Download gff for
UFO12466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 301..1339 | 1..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:45 Download gff for
UFO12466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdp-RA | 301..1339 | 1..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:45 Download gff for
UFO12466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7732465..7732881 | 624..1044 | 94 | <- | Minus |
| X | 7732988..7733489 | 122..623 | 100 | <- | Minus |
| X | 7734019..7734136 | 1..121 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:51 Download gff for
UFO12466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7626498..7626914 | 624..1044 | 94 | <- | Minus |
| arm_X | 7627021..7627522 | 122..623 | 100 | <- | Minus |
| arm_X | 7628052..7628169 | 1..121 | 96 | | Minus |
