UFO12470.5prime Sequence
901 bp (881 high quality bases) assembled on 2012-10-19
> UFO12470.5prime
AGTCGACATGGAAGATAACAAGGAGCTGCAATGCTTAATATGCAAATATT
CGGACACTGACGACCTGGTCTTTGGCGAATGGATGATTGTACGCAATTTG
CAGGTGCACTATTTTTGCCTGCTACTCTCAACGCATTTGCCGCAGCGCGG
CGGAGATAGCAGTGGAATCCTGGGATTTCTGCTTCGCGATATCCGCGAGG
AGGCAGCCGCCGCGGAGAAGAGGAAATGTTGGTACTGCAATAAGATTGGG
GCCAGTTTGCAATGCGATCGTTGCCGGTCATTGTTTCACCTGAAGTGCGG
CCTGGAGAATCGCGCCGTTTTCGAGTTCTGCGGCCAATACAAAAGCTACT
GCTACAAATGCAGGCCGATGGATGACTACAAGCGACAGCTGCAGTCGAAT
CCGCCGAGGAACGCCACTTGCCCCATCTGCTTCAGTTCCATCTATAAGGT
AGAGCTGCATTGCGTTGTGTACGGTGACTGCTGCCGCCTCGGATTCGCCC
ATAAGAAATGCATGCGTCAGTACGCTCTGACCTCCGGATATTACTTGCGT
TGCATTTGGTGTCGTTCGGAACGTTTCAGGGATTCCATACGCCTGCAGTC
GGTATTCGTGCCCGATCGCGATGCCACGTGGGAGAAGCAACGGAACGCCT
ATAGGGAGCTCCACGAGCGCAATCTGAAATGCGACCAGCCCAACTGCCTG
TGCCCCAGTGGTAGAACTTATAATAGATTATCGTGGGTGATACTATGCTG
CAGTTCTTGTGCCGCCCACTTCGGCTCATCTTAAATGCTTGGTGGGCGCC
CTGCGACTGCCGAAGAAGCGCGAGCGGACAGATTTCAGTGCTCTATGTTG
CCTGGACGTGGAGAGGAAGATTGCTGAATGGACCGGCTCGCAACAACAGA
A
UFO12470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pie-RB | 2089 | CG5354-RB | 138..1028 | 8..901 | 4320 | 99.2 | Plus |
| pie-RA | 2003 | CG5354-RA | 138..1028 | 8..901 | 4320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10421694..10422463 | 892..121 | 3635 | 99.2 | Minus |
| 2L | 23513712 | 2L | 10422530..10422643 | 121..8 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:18:58 has no hits.
UFO12470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:00 Download gff for
UFO12470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 135..1029 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:23 Download gff for
UFO12470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 134..1028 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:19 Download gff for
UFO12470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pie-RA | 134..1028 | 1..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:19 Download gff for
UFO12470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10421686..10422462 | 122..901 | 99 | <- | Minus |
| 2L | 10422530..10422647 | 1..121 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:23 Download gff for
UFO12470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10421686..10422462 | 122..901 | 99 | <- | Minus |
| arm_2L | 10422530..10422647 | 1..121 | 96 | | Minus |
