UFO12471.5prime Sequence
1004 bp (901 high quality bases) assembled on 2012-10-19
> UFO12471.5prime
AGTCGACATGGACCGGCGAGAGGATGCTCTGCTACAGGCCCTCCAAACGA
ACGCCAGCGAGACAGAGCGCTGGGAAGCCTTCAAGCGCGATAATGAGAGC
ACCATCCGGAACTTGGACAAGTTCGCAAAGAATCTCAGCGTGGAGGTTAT
GGTGCCCATTGGACGGAAGGCGCTGATGCCCGGCGAGCTGATCCACACCA
ACGAGCTTCTGGTGGGTCATTACGAGGGCTACTTCTCCGCCTGCTCCTCC
CACAAGGCCAAGGAGATCTGCCAGTACCGCCTGAAGCTGGCCGAGGAGCA
GCTGAAGAAGCTGGCCGTGGAGAACGATCTGTGGCAGAAAAAACTCCACA
CTCCATTTGCGGAGGGGGCGGTTCCCAGTGGCGACCAAGTAGAAATTGTG
GAGGATTTCAACGAGGAGTCTCACAACAAGTGGTTGGCGGAGCACAGAAA
GCGAATGCGACAGCAAAAGCAGAAGGAGCGCCTCGAACGGGAGGCGGAAC
CTGTGAAGAAAGATAATGAAGTGCTGCGGAAGCTAGAAGAGCGAGAAATG
ATGGAGGAACTTGGTCTAGATCCAGATAATATCGACGAGGATCAGCTGCA
CGATATGCTGAATCAAGAACCTCTGAAATCCACCAACGAAAGTAGTCCTA
AATCCTTAACCCAGGAAGAGGAGGATGAGCTGTGGAAGAAGCTGGAAGCC
GAGGAGCAGAACGAAGCCGATGAGCTCAGCTCAGAGCAGAGAAAGCCTTA
AAACAACGGATAACCTAGTGCGCCAGCTCATGTCCGGAGAACAGAACTCC
ATCTTCCAAAAACGCACTGCAGGAACCAATAGAAACGTGAAATACAGGAT
CCCATATCGGAGATGATGTGATGATGATGATGAGGCTGACAGGAGAGAGG
TGGCGATAATACGGGAGCAGATGTCCGCTGCTACCCACGAAGATCGTGAG
CCGTTCTCAGAGTTTCACTGCCATTACCTAGGCAAATGAGAGATACAAGT
CACT
UFO12471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| uri-RA | 2351 | CG11416-RA | 33..999 | 8..962 | 4410 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24566041..24566671 | 337..956 | 2455 | 97 | Plus |
| 2R | 25286936 | 2R | 24565682..24565985 | 34..337 | 1520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:19:05 has no hits.
UFO12471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:01 Download gff for
UFO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 21..1005 | 1..974 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:25 Download gff for
UFO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 26..1010 | 1..974 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:22 Download gff for
UFO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| uri-RA | 26..1010 | 1..974 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:22 Download gff for
UFO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24565686..24565984 | 38..336 | 100 | -> | Plus |
| 2R | 24566041..24566689 | 337..974 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:25 Download gff for
UFO12471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20453209..20453507 | 38..336 | 100 | -> | Plus |
| arm_2R | 20453564..20454212 | 337..974 | 96 | | Plus |
