UFO12472.5prime Sequence
1035 bp (868 high quality bases) assembled on 2012-10-19
> UFO12472.5prime
AGTCGACATGGATTTCCTCGCGAATATCATCAAAAGACCCAAAAGCATCG
CCACCACTGGCATCAGCACCAATCAGCCAACGACAATGGAAGCCCTAGAA
GCTGCTAGTCCCGCTGATGAATGTTCTACACCAAGGGATAAGGGAGGAGT
TACACTTGTATCCGCGCACCTGGACTCGTTACTAGAGTCCGCCTCTGAGG
AGCTGCAACGACTGGAGGGAAAGCACTGTGAACTATTTATGGAATCCATC
TCGAACCCACTCCCAGCCCCCGAGGACAGCACTGATAGTAGAGAAGAAAT
ACAGAAATTTCTAAGCGAAATAAACTTCAATCTGAACCAAGTGAGTGCTA
ACGAAATGGAGCACTTGCAAGCCATGAGTGGCGAGCTGAGTCCGTTGGCG
GTGAAGCCCAGTCCCAAGCCAACGAGCATGGATCTACAGAAGGCAATGGC
GGCAGCTCTGGGGCATCAGACGGCGGTACCCGGTGGACTTAAGCCAGAAG
ACGACCTCGTTCCAAAGTTTGGAGGTCTTCCCGAGTTCGATGAGACGCAA
ATACCGGAACTAGCTCCTTTAAGTACCGATATGGATACTCAACTGAAATC
CAACCATTCGGATTCGGATGTTTTTGTCGAGTGTTTATCGCTTCATAGCG
AGCGCTACACCGGAGATCGATCGGAGTTAGAGGCATATTCAAGTGCCCTT
AATGATGTTTTGGAGCAGCAGCTGTCCATGACCTCAGTTTCTACACTGGG
AGCTGAATTCAACGATCCTTTGGCAGTTAGCCAGCACAACAACGTCAGCT
ATGAAGCCATGGATGTGGATGACCTAAACGAAACCATGGATATTTTTAAG
GACTTTCTTGGATGCGGAAGACTCGTCATCTTATGCAACGCATTATTCTC
AGGCGTATCCCAGTCCAAACCAGAGAATAATTTTGTGCACTATCACCCAA
ATTCAGAGCAAAATAGGGTTTGACTTAGACAGTTAGCCCAACCCTCTAAC
CCTATATGTGATGCAAGATTCTGATTCTTTGTAGA
UFO12472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tacc-RM | 4637 | CG9765-RM | 240..1246 | 7..1016 | 4585 | 97.5 | Plus |
| tacc-RK | 5706 | CG9765-RK | 240..1246 | 7..1016 | 4585 | 97.5 | Plus |
| tacc-RC | 4906 | CG9765-RC | 240..1246 | 7..1016 | 4585 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4745797..4746175 | 385..7 | 1895 | 100 | Minus |
| 3R | 32079331 | 3R | 4743757..4744182 | 1016..588 | 1560 | 92.5 | Minus |
| 3R | 32079331 | 3R | 4744464..4744667 | 587..384 | 1005 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:11 has no hits.
UFO12472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:02 Download gff for
UFO12472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RK | 235..1222 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:30 Download gff for
UFO12472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RC | 235..1222 | 1..992 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:25 Download gff for
UFO12472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tacc-RC | 235..1222 | 1..992 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:25 Download gff for
UFO12472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4745797..4746180 | 1..385 | 99 | | Minus |
| 3R | 4743781..4744182 | 588..992 | 95 | <- | Minus |
| 3R | 4744464..4744665 | 386..587 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:30 Download gff for
UFO12472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 569503..569904 | 588..992 | 95 | <- | Minus |
| arm_3R | 570186..570387 | 386..587 | 99 | <- | Minus |
| arm_3R | 571519..571902 | 1..385 | 99 | | Minus |
