UFO12473.5prime Sequence
1086 bp (1005 high quality bases) assembled on 2012-10-19
> UFO12473.5prime
AGTCGACATGGAAAACTTAAACTTTGCACGCACGCCGCAATTTCTGCGCA
AAGTTATCTCCGAGGCGCGCAGATCGTTTATAAACAGCGACCATTTTTCC
GCCTCATCGACAAGGGGACGCTCGGAAACTGAGGAGGAGGCTATATCCGA
AATGGAGCTGGCCCACACTTTGATCCTTAATGAGGATGCTCTCAAGCAGT
TGCCCGAACACAAGCGGCCTGTGTTCGAGTTGGAATGGCTGCGCTACTTG
GAGAAGGCCCTGCCACTGGTGTCCAAAGCGGAGATCAAGGCGAGCCAGAA
GAAGCTGGTGCAGCAGCTCTCTGAAAGAATCCAGGGCGCACCAGGTCCGC
CCATTCGTAAGCTCATTGCTAGCGCGTTGGCCACGCTATTCTCCGTTGGT
GACACCTTCATGCTCTTCGACACCGTCAACGCCTGCAATGACATCCTGAA
GAACAAGGACGACTCGCCCAGCTACTTGCCCACAAAGCTTGCCGCCATTT
GTGTGCTGGGCTCTATGTATGAGAAGCTGGGCAGGATGATGGGCCGCACC
TACGAGGATACGGTGCAGATCCTTATTCGAACGCTTCGCAACGCTGAGTC
GCAGGCGCGGATTGAGATCATGCACACGCTGGAGAAGGTGAGCGCTGGCA
TGGGCACAGCCATTGCCAACGTGCACAAGGATATTTACAAGGCGGCCAAG
CATTGCCTGTTGGACCGAGTTATGGCTGTTCGAGTGGCTGCAGCCCGCTG
CATCCTTAAAATGATATACAGTGCACCATTCCTGTACCAAACGGAGCTGG
AAAGCTTGGGAACATTGTGTTTCCGAGCCTTCGACGGCAGCAACTATGAA
GTGCGATGTGCGGTAGCTCAGCTGCTGGGAACACTTCTAGCCTATACTCA
CACTGGCAGAGGCGGCACAAGCAAAAAGAAACAGGACAGCGGTGGCTATT
CAGCGGGCAGGAGCTACCCACGCTGCTTCCCTGGATGAGCTCTGGCATCT
CATGTCAGGTTTCTTGTGTTGACGCATCTTTTCTCAGGTACGGAAAGATA
TCCAGGCCAGGCTCAGGTGTCACGGGAGTGCATGTG
UFO12473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:19:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2747-RF | 7322 | CG2747-RF | 334..1417 | 8..1072 | 4810 | 97.3 | Plus |
| CG2747-RE | 7289 | CG2747-RE | 334..1417 | 8..1072 | 4810 | 97.3 | Plus |
| CG2747-RC | 7026 | CG2747-RC | 334..1417 | 8..1072 | 4810 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8024653..8025073 | 489..69 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 8024145..8024593 | 935..490 | 2100 | 98.9 | Minus |
| 3R | 32079331 | 3R | 8026777..8026841 | 72..8 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:19:57 has no hits.
UFO12473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:07 Download gff for
UFO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 309..1410 | 1..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:54 Download gff for
UFO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 328..1429 | 1..1081 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:50 Download gff for
UFO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2747-RC | 328..1429 | 1..1081 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:50 Download gff for
UFO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8023980..8024593 | 490..1081 | 94 | <- | Minus |
| 3R | 8024653..8025069 | 73..489 | 100 | <- | Minus |
| 3R | 8026777..8026844 | 1..72 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:54 Download gff for
UFO12473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3849702..3850315 | 490..1081 | 94 | <- | Minus |
| arm_3R | 3850375..3850791 | 73..489 | 100 | <- | Minus |
| arm_3R | 3852499..3852566 | 1..72 | 94 | | Minus |
