UFO12474.5prime Sequence
1147 bp (1009 high quality bases) assembled on 2012-10-19
> UFO12474.5prime
AGTCGACATGGCGGACATAGTGTACCCCACCGGATGCCGGCCGCTGGTCG
AGGATTTGGGCACAGACGAGCTGATAAGGCGCCTCAAGACCCTCGCCAAT
GTTCTGCAGACCATGGACCAGGACGACAATCTCTACCAGCAATACATACC
ATTGGCCCTCCATCTGCTGGACGACTTCTTTATGCAACATCCATCCCGTG
ATGTCCAGCTCTTAATCGCGTGCTGCGTGGCGGATGTCCTGCGGGTTTAT
GCGCCAGAGGCTCCCTACAAAGAGCAAGATCAAATCAAAACTATATTTAA
GTTTTTTATCAAGCAACTGCACGGTCTGAAGGATCCGCGCGATCCCTCTT
TCAAGCGTTACTTCTATCTGCTGGAGAACCTTGCTTTTGTCAAGTCTTTT
AATATGTGTTTCGAACTGGAGGACTGCCAAGAAATCTTCCAAGACCTGTT
TAGTACCATCTTCAAGATTGTCAATGACCAGCACAGTGTCAAGGTGACTA
ACTTTTTTCTAGATGTGCTAAGCCCGTTGATCACAGAAGCCGACAATCTG
TCGGTGGAATTGTTGGATCTCATTCTGATTAACATCGTAGAGCCGTACAA
ATCTAACAACAAGTTTGCCTGCCAATTAACAGAACAACTTCTCACTAAAA
CGGGCGATGCTCTCGAGTCCACCATCAAAATGTTCTTTAACCGTGCTCTG
GTCATGGATAAGCCAAACACAAAACTGTCCATTACAAACAAAATCTATGA
TATCATTTACGAGCTTAACCGCATCAATGCAGGCTTGTTGTGTTCAGTGC
TACCTCAGCTGGAGAACAAACTGCTGTCCACGGACGATGCTGAGAGGCTA
AAGGCAACCACTCTCTTGTCTCGTATGTTCTCCGAAAAGGACTCGCAACT
AGCGAAAAGTACCCCAACCTGTTGAAATCTTCTTTGGGCGCTTCTGCGAC
ATCACCGACCAGTTCGCATCAGTGTGTTCAGTCATCCATGCACTTTCCTG
CTCATCACCCAAGTTCTTTCAGCACGAATTCACCGAGAAATTGCGGCTTC
GAAATTCACGATCTGACGAAGTGGTCCGCCACCGAGGGGGTTAATGGCTA
TTGGTGGAACTGCCCAATGCGTAACTTCACCTTCGTTCGGATCGCTC
UFO12474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:20:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pds5-RB | 4929 | CG17509-RB | 529..1657 | 8..1138 | 5200 | 98.1 | Plus |
| pds5-RA | 4671 | CG17509-RA | 271..1399 | 8..1138 | 5200 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:20:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12028715..12029102 | 87..474 | 1940 | 100 | Plus |
| 2R | 25286936 | 2R | 12029166..12029373 | 475..682 | 1040 | 100 | Plus |
| 2R | 25286936 | 2R | 12029431..12029600 | 682..851 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 12029664..12029896 | 852..1082 | 675 | 94.5 | Plus |
| 2R | 25286936 | 2R | 12028575..12028655 | 8..88 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:20:03 has no hits.
UFO12474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:26:07 Download gff for
UFO12474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 257..1375 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:52:58 Download gff for
UFO12474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 264..1382 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:53 Download gff for
UFO12474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pds5-RA | 264..1382 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:53 Download gff for
UFO12474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12028568..12028655 | 1..88 | 95 | -> | Plus |
| 2R | 12028717..12029102 | 89..474 | 100 | -> | Plus |
| 2R | 12029166..12029373 | 475..682 | 100 | -> | Plus |
| 2R | 12029432..12029600 | 683..851 | 100 | -> | Plus |
| 2R | 12029664..12029931 | 852..1121 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:52:58 Download gff for
UFO12474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7916073..7916160 | 1..88 | 95 | -> | Plus |
| arm_2R | 7916222..7916607 | 89..474 | 100 | -> | Plus |
| arm_2R | 7916671..7916878 | 475..682 | 100 | -> | Plus |
| arm_2R | 7916937..7917105 | 683..851 | 100 | -> | Plus |
| arm_2R | 7917169..7917436 | 852..1121 | 93 | | Plus |
