UFO12475.5prime Sequence
1058 bp (948 high quality bases) assembled on 2012-10-19
> UFO12475.5prime
AGTCGACATGTTTGGATCCAAGCTGCGCTCCTGGATGGAGACGCATATTG
TGCGTCCGCGGAAGAAGGGCAGTAAACACAAGCAAGGGACCGTGGACGCA
GGCAGTTCTTGCGTGGGGAAGAAGGCGGGCACCTTACCAACACAGGGCAG
CAACCTAACTAGCCCGGTCCTGACCAGTAGCGGAAGCCACAGCATCGCCA
GTCCGGTGCGGAGGCGCGAGGTCTCCCCCATCCAGTGTCACCCACCCAGT
CGTCGATATGGCTGGCAATCCCCAGATGAAGATTCCTACGTCATAGCCTC
GCCCAAGTCGGACAATTTGCTTCACGCTCCGCACTGCTATCAGCCGCATC
AACCGCTCCAGCAGCCGTCGCACCACTTAAGCGTGCCCAATAGCAAGGAA
ACCTATGCGGAGAAATCGCCCACCAGGGTAAACTGCTCTTCGTCCTCCAT
ATCGTCGTTGTCCTGGTCAACGGGATCCAAGGAGCCCTCTTCTGGCAAAC
AAGCAATTTTTAGAGAGCAGTCCTTAAATGGGGAATACCACATCCCACCT
GAGGAGGAGGTGGAGTACGAGGAAGTTGGCGCTTTGCTGCTTCGGCATGC
ACCACCCATTGCAGAACAACAGCGCCCGCAGTCAGAAAACTTAAGTGCCG
TGCGTCTAATCTACAAGGAAGAGCCAAGGCAAAGCAAGAATCATGTTCGT
TACGGTCGCCTGCTTCCCTCCAAGCTAGCACCGGCTCAGCATGGCGAGTC
ACTGGATAATTTGACAGCTACACCGCCTATTCCACCCGCTTCACTTACCG
GCTCGCGTATTTCGAACTCCACGAAGAATTCAGCGCAATAATTTTTATTT
CGGGACCCCGGGCCACACAGCTTGCCCTCGCCAGAAAGCGCTTATTCCAC
GGGCTACTCACAGATGGCACATCGCATGCGCGTCAGCAACTACAATCCAC
CTGGAGTACTACTTTAACATGCGCTCGGGACCCACTATTCCGGAAAGCGT
CAACTCGCTTGTCGTCAGGACAACGGTAACAGTCGCCTTACCGCATTGAA
AGAAATTG
UFO12475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:16:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12851-RD | 6450 | CG12851-RD | 801..1811 | 8..1016 | 4735 | 98.4 | Plus |
| CG12851-RC | 5948 | CG12851-RC | 801..1811 | 8..1016 | 4735 | 98.4 | Plus |
| CG12851-RB | 5254 | CG12851-RB | 801..1811 | 8..1016 | 4735 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24949924..24950700 | 242..1016 | 3335 | 97.8 | Plus |
| 2R | 25286936 | 2R | 24949633..24949866 | 8..241 | 1170 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:16:24 has no hits.
UFO12475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-19 11:25:28 Download gff for
UFO12475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 790..1813 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:50:52 Download gff for
UFO12475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 792..1815 | 1..1019 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:55:59 Download gff for
UFO12475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12851-RB | 792..1815 | 1..1019 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 18:55:59 Download gff for
UFO12475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24949624..24949866 | 1..241 | 98 | -> | Plus |
| 2R | 24949924..24950704 | 242..1019 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:50:52 Download gff for
UFO12475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20837147..20837389 | 1..241 | 98 | -> | Plus |
| arm_2R | 20837447..20838227 | 242..1019 | 97 | | Plus |
