UFO12501.5prime Sequence
1005 bp (881 high quality bases) assembled on 2012-11-02
> UFO12501.5prime
AGTCGACATGTTGGAAATATTTAGGACGCCCTATGCGGACTCCAAACAGC
TGCCGTTGGCAACTGGACCCGGTCCCATCATAATTATCCTCATTGGATAC
CTTCTGGTAGTTTTTAAGGCCGGCAGGAAGTTCATGGAGCATCGAGAACC
TTATAATCTGCGAAAAGTGCTTAAGTACTATAACATGTTCCAGATATTCT
ACAATATAATGATGCTCCTGCCCGGATACTACTTCATGTTGGTATTCCAA
CCGTACAACTTTCGCTGCATGACTGTCCTGCAGCAGGATCATCCGCTGAA
GAACTGGGAGCGCTGCATCAGCTATGCTTACTACATAAACAAGATCGTTG
ACCTGCTTGACACCGTGTTCTGCGTGCTGCGCAAGAAGTACTCGCAAATA
ACGTTTTTGCACGTTTTCCACCACGTCCTGATGCCATCCGCCGGATACTT
GATAATACGATTCTATGGCTACGGAGGTCAACTCTTCTTCCTGTGCTCCT
TCAATGTATTCGTTCATATCTTCATGTATGCCTATTACTATTCGGCCATC
AAGGGCAATACGGTGCGTTGGAAGCGGTACTTGACCCTCATGCAAATGCT
GCAGTTCCTGCCTCATGTTTGGCCATTGCGCCTTAACCGCCATGCAGCGG
CAGTGCACTGCATCGCAGGGAACCCTCTTTCTGGTCAGCTGCTCCGCGAC
CATCATGTTTATCATGTTCGCCAACTTTTATTTCCAGTGCTACCTGAGAC
CGAAGCATAACGAGAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
CCAGGTAGTGTCATAATCATATCATATCATATCATATCCACAGCTAGAGT
CTGTCTATATGTGATCCACATAAACGCGCGACGCGTCACATCATGATCAG
CTCGACTCAGTCAGACACATACCCTGCTCAATGATATCAGCCAGACACCG
ACTCGTCGAGATTCTAGCTGATCTATCTAAGTCATAGCTCTAGTAGAGTG
GTACA
UFO12501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31141-RA | 961 | CG31141-RA | 79..837 | 8..767 | 3760 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23923653..23924195 | 224..767 | 2655 | 99.6 | Plus |
| 3R | 32079331 | 3R | 23923378..23923594 | 8..224 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:30:08 has no hits.
UFO12501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:04 Download gff for
UFO12501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31141-RA | 72..845 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:07 Download gff for
UFO12501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31141-RA | 72..845 | 1..775 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:22 Download gff for
UFO12501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31141-RA | 72..845 | 1..775 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:22 Download gff for
UFO12501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23923371..23923593 | 1..223 | 98 | -> | Plus |
| 3R | 23923653..23924203 | 224..775 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:07 Download gff for
UFO12501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19749093..19749315 | 1..223 | 98 | -> | Plus |
| arm_3R | 19749375..19749925 | 224..775 | 99 | == | Plus |
