UFO12505.5prime Sequence
1080 bp (944 high quality bases) assembled on 2012-11-02
> UFO12505.5prime
AGTCGACATGGCCACCAAACGCGTGCTGACGCCTAATATTTTGGAGAATG
ATAACACTGACGTGACGTCATCCAATCCACAAAAGAAATTCAAAGAGCAA
CTGGATTTTTCGTCAGACGAAGTGGAGAACATTGATTGGGGTGACAATGA
TGACTTCGATTTGGCGCTGATTGCAGCTATGGATTCTATATCCAATCATC
GATTGGAGCTCACCAAGTGGCAGCGTTGCGAAGTGGTGCGGCTGGAGCAG
CTCCCCAATAGAAAAGGCCTTAAAGTGCATGTTAAGAGGATTTCTGGCGG
GGATCCGGAGACAGCTGATTGCCAACTGCTACCGCCGTGGAATTGCATGC
CAATGCAAGTTGGAGACACTGTCTCCCTGTTGGGCAAGTGGGATCCGTCT
GCAGGATGCTATGTGGTCGATAAGGAGCAGGGCTACTGCGTGTCCCATCC
GGATTTCCTCATTTCCGGCACCACAGTCACCGGTTCCCTGTTTTGCAAAC
GGAAATCTGTTCTGCAGGAACGATTTCGCGGTCTGGACTCGGGAAACTCT
GTTATGGTCATTGGCACTCTGGTGCACGAATTGCTGCAAAAGGTTCTACG
CCAGAAGCTCTTCGATAAAAAACACATTCAATCTGCCCTCCAGGAGATGC
TGGCCAGCTCTTCTTTGGCTCATTTACTCTATGCCAGCAATCTCATCCAG
GTGGAAATGGAGGATCATCTGATGAAATTCATTGATCCCATTGTCAGTTT
TGTGGCCCAATATGTGAAGGGTGAACCGCCAAGTGTTTTGCTGCCCGAAG
TCTATAGAGGTCAATCCACGAGATATGCGATATAGAGGAGACTCTGGGTT
CCACACTGGGACTCAAGGGTAAGTGGATGTCTCGTAAAGTAAAAATCACG
GCAGAGGGAGGAGATCATACACTGACTGAGACGGCGAGCAGCTTCTCATG
AACACAGGCATGCTGCTCTACACTGATGCATCTGCCAGGGCAGATACTCA
TCGGGATGCTTCGACTCAGAGGAATCTAGTGGTGCTACGGAACCACAGGA
TCCTTAGTAGAATGATCGCTATGCTACCGG
UFO12505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2990-RB | 3683 | CG2990-RB | 91..1126 | 8..1012 | 4465 | 97 | Plus |
| CG2990-RC | 3680 | CG2990-RC | 91..1123 | 8..1012 | 4410 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10010571..10011116 | 8..553 | 2730 | 100 | Plus |
| X | 23542271 | X | 10011174..10011549 | 554..920 | 1485 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:30:28 has no hits.
UFO12505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:06 Download gff for
UFO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RC | 64..1007 | 1..935 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:23 Download gff for
UFO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 86..1032 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:33 Download gff for
UFO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2990-RB | 86..1032 | 1..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:33 Download gff for
UFO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10010566..10011116 | 1..553 | 99 | -> | Plus |
| X | 10011174..10011549 | 554..920 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:23 Download gff for
UFO12505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9904599..9905149 | 1..553 | 99 | -> | Plus |
| arm_X | 9905207..9905582 | 554..920 | 97 | == | Plus |
