UFO12508.5prime Sequence
1085 bp (935 high quality bases) assembled on 2012-11-02
> UFO12508.5prime
GTCGACATGGAGGAGTCGGGTCCGCCAAGCAATCCGTCTCCGGTTGCGTC
ACGTGGCCGCGGACGTGGTCGCCCGCCGAAAGTGGCGCTTTCCGCGTTGG
GAAATACGCCCCCGCACATTAATCCATCGTTAAAACACGCCGATGCAGAG
GCATCGCCCACGGCGCCGGAGGATCAGGATTCCGGACAGAGCGAGTGCCG
GCGCAGTTCGCGCAAGAAAATCATCAAGTTCGATGTCCGGGATTTGCTAA
ACAAGAACCGCAAGGCGCACAAAATCCAGATCGAGGCACGGATCGACTCG
AATCCCAGTACCGGCCACTCCCAGTCAGGCACAACTGCAGCATCCACATC
CATGTCAACAGCAACAGCATCAGCCGCATCTGCATCCTCAGCCGCGACCG
TGAGCCGTTTGTTTTCCATGTTCGAGATGAGCCACCAATCATTGCCGCCA
CCACCACCGCCGCCAACCGCCCTCGAGATCTTCGCCAAGCCAAGACCCAC
ACAGAGTCTGATTGTGGCCCAGGTTACCAGTGAACCATCGGCTGTTGGTG
GCGCACATCCTGTGCAGACGATGGCCGGCCTGCCGCCGGTGACACCTCGC
AAGCGGGGTCGTCCCCGTAAGAGTCAACTAGCGGATGCGGCCATTATTCC
AACTGTCATTGTGCCCAGCTGCTCCGATTCCGATACGAACTCCACCAGCA
CGACCACTTCCAACATGAGCAGTGACAGCGGCGAGCTTCCTGGCTTTCCC
ATACAGAAACCCAAGTCTAAGTTGCGGGTCTGACTCAAACGCTTGAAACT
GGGCGGCCGGCTGGAGTCCTCCGATTCGGGGAACTCGCCATCGTCTCTCG
CCGGAGGTTGAGCACCAGCACTCCAGGATGAGAACGCCATGGACGAACGG
CCAAGCAGGAGCAAACCTGAGCCGATGGTCGATGCCGAAGAAACTCCGAT
TCCGACTCAAGACCTATTTCGTTGAATCGAAACGGAAGCCCCAGGGAGAG
GGAGACAGGAAGGGACGGCAGTCGAGGTGGTCCCAAGATTTGATCGACTT
CGACTGGAACTGGGCAAGCAGAACCACTCCCGACC
UFO12508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Set2-RB | 7372 | CG1716-RB | 162..1260 | 7..1085 | 4795 | 97 | Plus |
| Set2-RA | 7583 | CG1716-RA | 226..1324 | 7..1085 | 4795 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13413467..13414426 | 7..959 | 4410 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 18:30:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6860 | 326..398 | 158 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6754..6823 | 331..400 | 152 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2379 | 332..405 | 151 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6782 | 321..395 | 150 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6827 | 306..398 | 143 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..6842 | 331..398 | 133 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6794 | 319..392 | 132 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6851 | 306..395 | 128 | 63 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1097..1163 | 326..392 | 128 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2427 | 326..392 | 127 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1138 | 314..400 | 126 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2411 | 331..400 | 125 | 64.3 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 530..595 | 337..402 | 123 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2369 | 337..400 | 122 | 65.6 | Plus |
UFO12508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:07 Download gff for
UFO12508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Set2-RB | 182..1149 | 1..959 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:27 Download gff for
UFO12508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Set2-RA | 218..1185 | 1..959 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:37 Download gff for
UFO12508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Set2-RA | 218..1185 | 1..959 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:37 Download gff for
UFO12508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13413459..13414426 | 1..959 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:27 Download gff for
UFO12508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13307492..13308459 | 1..959 | 98 | == | Plus |
