Clone UFO12509 Report

Search the DGRC for UFO12509

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:125
Well:9
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG5728-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12509.5prime Sequence

268 bp (213 high quality bases) assembled on 2012-11-02

> UFO12509.5prime
GTCGACATGGTGCCGAACGAGAAAAGCTTTCCCCGAGGCGGGACAATCCA
CAGCGAAGTCAAAACCGACGACGTGAGCCTGAATATCGTTTTCGGTGCCT
CGCAGAAGAAGGTGAAGAAGGCGCCGAAAGTAAAAGAGAACCTTCTGAGC
TACGAAACCGAGGAACAAAATGGCCAACTGGAGGCCTTCTCCGCGGGAAA
CGCTTCAATATGGGACCCGGCTGCAGGGAGGGACAATGCTGGGTTCATTG
GGGGAGGTGGGCTCAAGG

UFO12509.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5728-RA 4622 CG5728-RA 96..312 7..227 990 97.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24332976..24333084 196..88 545 100 Minus
3R 32079331 3R 24333139..24333221 89..7 415 100 Minus
Blast to na_te.dros performed on 2014-11-28 18:30:47 has no hits.

UFO12509.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:08 Download gff for UFO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5728-RA 89..322 1..242 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:33 Download gff for UFO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5728-RA 91..324 1..242 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:43 Download gff for UFO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5728-RA 91..324 1..242 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:43 Download gff for UFO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24333141..24333223 1..87 95   Minus
3R 24332926..24333084 88..254 92 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:33 Download gff for UFO12509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20158863..20158945 1..87 95   Minus
arm_3R 20158648..20158806 88..254 92 <- Minus