UFO12511.5prime Sequence
898 bp (723 high quality bases) assembled on 2012-11-02
> UFO12511.5prime
AGTCGACATGCTCCGTGAGTGCCTGGCGCTGATCGCCCTCCTGCAGCTGG
GGGGCGTGACGCGGGCCCTGCCCACTATACAGGGCGGTAATGCGCGGCAG
CAGTTGGACAAGAGTTTCTTCCAGCCGCCGGAGATCGAGCAGACGATCGA
CGAGGTGCAAAAGATACTAGCCAACGATCCGGCCTTGCCTAGGCTGACGC
GTGGCGAGATCGAGGAGCTGTACGAAAAAGTAACCCGCGAGGAATACGAG
AAAAGCTTGGAGGCAGGCGACATGAGCCGAGCGGACAGCATGCGAGCCCT
CATGCTAGTCCTGCCCTTCAACACGGACAACAACACGGAGGAGAATCTGC
AGGAGCTGTACACGCGGCCTCCGGTGACTCGCGTCATCGACGCCTACACG
CCACCGGATCCGGTGAAGTTTCTAACCGCGGATCCCAGTGCGCTGCCAAG
AAGTACAGTGCCTGGAGGCAATCCTGCGGTGGCAGCCACGACCTACAAGC
CAGCCTACAGCTTACTGCATGGCCAGGCGAATCCTCTCCAGCAGCAGTTC
AGACCCATGCCGCAGGCCACAACCTACCATCCGCCAGCGCCGCCGCCGGT
GGTTTATCAGGACTTCAAACCAGTCACTGCAGCTTCTCAGCCTTCAGCTA
ATCCCGCTGCTGCACCTTCAGCCGCCGATCAGTCCATAATGAAGATGTAG
TCTAGAACAAGCTCGGGAGAGGTTTACGAATGACGGCGCTCCAGTGCTGG
CGCGAAGTCGCAAGAGTGCATACGGACTCACCGGCGGGTAGCTGCACAGG
TCATACGTGATCGCACAGCCTGTGACAGAAGACAATGCATCGCTCGCTGT
ACTCCCAAAACAACATGCCTACGATGTGGAAGCACACAAGTGGACTGG
UFO12511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:29:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11409-RC | 4397 | CG11409-RC | 285..953 | 8..676 | 3345 | 100 | Plus |
| CG11409-RB | 4457 | CG11409-RB | 345..1013 | 8..676 | 3345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:29:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1332962..1333437 | 676..201 | 2380 | 100 | Minus |
| X | 23542271 | X | 1333503..1333696 | 201..8 | 970 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:29:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 642..691 | 627..676 | 115 | 70 | Plus |
UFO12511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:01 Download gff for
UFO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 1..681 | 8..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:00 Download gff for
UFO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 342..1025 | 1..685 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:14 Download gff for
UFO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11409-RB | 342..1025 | 1..685 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:14 Download gff for
UFO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1332950..1333436 | 202..685 | 99 | <- | Minus |
| X | 1333503..1333699 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:00 Download gff for
UFO12511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1226983..1227469 | 202..685 | 99 | <- | Minus |
| arm_X | 1227536..1227732 | 1..201 | 98 | | Minus |
