Clone UFO12512 Report

Search the DGRC for UFO12512

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:125
Well:12
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptNup153-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12512.5prime Sequence

1115 bp (990 high quality bases) assembled on 2012-11-02

> UFO12512.5prime
AGTCGACATGGAGGATGCACAGGAGCAAAGGGAATCCTCGCAAGCCGAAT
TGGCCAAAAAGCATCCGCTGACGCCGCTCAAGGAGCTGCCTGAAGAAAGC
GAGGAGGAGGAGGAGGAAGAGGATGAATCCTCGGCGGGAGCCCTACGGGA
GTCTGACAGCAACAACTCCATCATGGGGAAGATGAAGATGCGCGTGTCCA
GCATTCTGCCCGCCTCCTTGAGCGGTTGGTTTTCGCCGTCGTCCAAAGAT
GGGAACGATGCCTTATCCTCCCCAGCTAATCTCCGCCAGTCACAGCCACG
CCAGTCCAATGGACGCCTCACTACCAAGCGGAAACGAGGACGCCGTCGGA
TAATGCTAGCCGAAGTGGATGCCGATGCAGCCGATGATCTTGATGACGGC
TCCGATGCCAAAGGCCTCAACTATGAGGAGGTGGCCCTGGCCGACAACAT
AGCCGAACACGACCTGGCCGCCGAGGATGAACAGACGCGGCGGAGCGAGT
ACAATGTGTTCCTGCTGCGCAAGCGAGCCGGGGCTGTTGCAGCTGCCGGC
GGTGACGAGGATGAGGCCGAGGAGGATGAACTGGAAGAGGACGACGAGGA
TGGCGATGAGGAGGATGACGATGAAGAGCAGGAGAATCTCCAACAGTCCG
CCGCCGTGCAGACCAAGCGTCGACGCCTGGAGCTGGAGACCCCCGTCAAT
TTGCCGAACATGCGTCGTCTGCCCCTTTTGTCATCCACGCCTGCTGCTCC
GCTCGCGGCTGCCACCAGCTCCTCCAGCTCCCAGATGTACAAGGGCGTCA
GCCACATTGCGCCACATCGGCGCAATCACCTCAATTTGTATGGTAGTCAA
CGGCAGCGCGAACCCGCGTACACTTTCTCACGGGCACCGAAGCTGCCGAG
GGAAGCACCGGGGATCTGCCACACAGCATCCGCCGTTCACTGAACATACC
CTTTCGGAGGAAGCAGCACCGCTACAGCTACAACAACAGCTATCAGCTCT
ACACAGCGACATCGCTCATAGCAGCACCAATCGACGCGATCTTACCATGG
ATGAAACGGGGACTGGCCGCCATTGAATTCCGGAAGAACTTCTCAATCAT
TTTGCTCGTGAAAAT

UFO12512.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
Nup153-RC 7927 CG4453-RC 915..2023 8..1102 4995 97.6 Plus
Nup153-RD 7981 CG4453-RD 831..1939 8..1102 4995 97.6 Plus
Nup153-RA 7843 CG4453-RA 831..1939 8..1102 4995 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16600380..16600895 167..682 2580 100 Plus
X 23542271 X 16600952..16601198 681..926 1155 98.8 Plus
X 23542271 X 16600155..16600313 8..166 795 100 Plus
X 23542271 X 16601374..16601439 925..990 220 95.5 Plus
X 23542271 X 16601488..16601564 1026..1102 190 83.1 Plus
Blast to na_te.dros performed 2014-11-28 18:30:02
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy2 6841 gypsy2 GYPSY2 6841bp 5950..5999 125..75 117 72.5 Minus

UFO12512.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:02 Download gff for UFO12512.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup153-RC 830..1950 1..1115 96   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:03 Download gff for UFO12512.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup153-RA 828..1948 1..1115 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:18 Download gff for UFO12512.5prime
Subject Subject Range Query Range Percent Splice Strand
Nup153-RA 828..1948 1..1115 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:18 Download gff for UFO12512.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16600152..16600313 1..166 97 -> Plus
X 16600380..16600895 167..682 100 -> Plus
X 16600954..16601198 683..926 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:03 Download gff for UFO12512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16494185..16494346 1..166 97 -> Plus
arm_X 16494413..16494928 167..682 100 -> Plus
arm_X 16494987..16495231 683..926 98 -> Plus