UFO12512.5prime Sequence
1115 bp (990 high quality bases) assembled on 2012-11-02
> UFO12512.5prime
AGTCGACATGGAGGATGCACAGGAGCAAAGGGAATCCTCGCAAGCCGAAT
TGGCCAAAAAGCATCCGCTGACGCCGCTCAAGGAGCTGCCTGAAGAAAGC
GAGGAGGAGGAGGAGGAAGAGGATGAATCCTCGGCGGGAGCCCTACGGGA
GTCTGACAGCAACAACTCCATCATGGGGAAGATGAAGATGCGCGTGTCCA
GCATTCTGCCCGCCTCCTTGAGCGGTTGGTTTTCGCCGTCGTCCAAAGAT
GGGAACGATGCCTTATCCTCCCCAGCTAATCTCCGCCAGTCACAGCCACG
CCAGTCCAATGGACGCCTCACTACCAAGCGGAAACGAGGACGCCGTCGGA
TAATGCTAGCCGAAGTGGATGCCGATGCAGCCGATGATCTTGATGACGGC
TCCGATGCCAAAGGCCTCAACTATGAGGAGGTGGCCCTGGCCGACAACAT
AGCCGAACACGACCTGGCCGCCGAGGATGAACAGACGCGGCGGAGCGAGT
ACAATGTGTTCCTGCTGCGCAAGCGAGCCGGGGCTGTTGCAGCTGCCGGC
GGTGACGAGGATGAGGCCGAGGAGGATGAACTGGAAGAGGACGACGAGGA
TGGCGATGAGGAGGATGACGATGAAGAGCAGGAGAATCTCCAACAGTCCG
CCGCCGTGCAGACCAAGCGTCGACGCCTGGAGCTGGAGACCCCCGTCAAT
TTGCCGAACATGCGTCGTCTGCCCCTTTTGTCATCCACGCCTGCTGCTCC
GCTCGCGGCTGCCACCAGCTCCTCCAGCTCCCAGATGTACAAGGGCGTCA
GCCACATTGCGCCACATCGGCGCAATCACCTCAATTTGTATGGTAGTCAA
CGGCAGCGCGAACCCGCGTACACTTTCTCACGGGCACCGAAGCTGCCGAG
GGAAGCACCGGGGATCTGCCACACAGCATCCGCCGTTCACTGAACATACC
CTTTCGGAGGAAGCAGCACCGCTACAGCTACAACAACAGCTATCAGCTCT
ACACAGCGACATCGCTCATAGCAGCACCAATCGACGCGATCTTACCATGG
ATGAAACGGGGACTGGCCGCCATTGAATTCCGGAAGAACTTCTCAATCAT
TTTGCTCGTGAAAAT
UFO12512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nup153-RC | 7927 | CG4453-RC | 915..2023 | 8..1102 | 4995 | 97.6 | Plus |
Nup153-RD | 7981 | CG4453-RD | 831..1939 | 8..1102 | 4995 | 97.6 | Plus |
Nup153-RA | 7843 | CG4453-RA | 831..1939 | 8..1102 | 4995 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16600380..16600895 | 167..682 | 2580 | 100 | Plus |
X | 23542271 | X | 16600952..16601198 | 681..926 | 1155 | 98.8 | Plus |
X | 23542271 | X | 16600155..16600313 | 8..166 | 795 | 100 | Plus |
X | 23542271 | X | 16601374..16601439 | 925..990 | 220 | 95.5 | Plus |
X | 23542271 | X | 16601488..16601564 | 1026..1102 | 190 | 83.1 | Plus |
Blast to na_te.dros performed 2014-11-28 18:30:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 5950..5999 | 125..75 | 117 | 72.5 | Minus |
UFO12512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:02 Download gff for
UFO12512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup153-RC | 830..1950 | 1..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:03 Download gff for
UFO12512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup153-RA | 828..1948 | 1..1115 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:18 Download gff for
UFO12512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nup153-RA | 828..1948 | 1..1115 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:18 Download gff for
UFO12512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16600152..16600313 | 1..166 | 97 | -> | Plus |
X | 16600380..16600895 | 167..682 | 100 | -> | Plus |
X | 16600954..16601198 | 683..926 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:03 Download gff for
UFO12512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16494185..16494346 | 1..166 | 97 | -> | Plus |
arm_X | 16494413..16494928 | 167..682 | 100 | -> | Plus |
arm_X | 16494987..16495231 | 683..926 | 98 | -> | Plus |