UFO12513.5prime Sequence
739 bp (638 high quality bases) assembled on 2012-11-02
> UFO12513.5prime
AGTCGACATGCTTAGCAGCAATACAAGAGGTGATTGTTCCGATACCGCAG
AAGAGATGACCGTCGACAGCAGAGATTCCAAAGATCTGAGTGCTCAGGAT
ATAGGCGAGCAGAAGCAGCAGCAAATGGAGGACCAGTTGGAGGATCAGTT
GAACGATTCCAGAGACCCCCAAAACAACAATAACAATATCGATGACGACG
CTGATGAAGATGCTGAGTTCGAGGAGCCAGAAAAGGCCAATCCCCAACAG
GATCAGGATTTGGGAGAGACAGAGATGGAACAGGAACACGATCTTCAGCA
GGAGGATCTTCAGCAGGAACTGCCTGCAAACAGCCCAAGCACTCCGCCCA
GGAGTCCCAGCTCTCCCCAGCTGATTCCCAAGCTGGAACAGCCCGCTACG
CCGCCCTCGGAGCCAGAAGCCTCTCCGTGCCCCTCACCCTCACCATGTCC
CACGCCCAAGTACCCCAAAGTGCGTCTGAATGCGCTCCTGGCCTCAGATC
CTGCCCTTAAGCCAGATGCCAAGGAGCTGACCCTGCCGGACTCTCGTCTC
CTGGCTCCTCCGCCGCTCGTCAAGCCGGACACGCAAGCGCAACCGGAGGT
AGCAGAACCTCCGGCCCCGGGGTATAAGTAATCCTCCGTTTACCTGAAAG
TTGGTCTCCTGGACTTTTGCATCCGTACCGTGACATTCAGATTGGATTGG
CTGCCAGAAAGTGCGTTAATTTTTTCACGCCCCCCGGGG
UFO12513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ush-RC | 4482 | CG2762-RC | 303..906 | 8..611 | 3020 | 100 | Plus |
| ush-RA | 4752 | CG2762-RA | 573..1176 | 8..611 | 3020 | 100 | Plus |
| ush-RE | 6084 | CG2762-RE | 1953..2536 | 28..611 | 2920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 536021..536559 | 73..611 | 2695 | 100 | Plus |
| 2L | 23513712 | 2L | 525390..525436 | 28..74 | 235 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:31:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1065..1157 | 108..199 | 129 | 61.3 | Plus |
UFO12513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:09 Download gff for
UFO12513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 567..1175 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:44 Download gff for
UFO12513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 568..1176 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:49 Download gff for
UFO12513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ush-RA | 568..1176 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:49 Download gff for
UFO12513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 525392..525436 | 30..74 | 100 | -> | Plus |
| 2L | 536023..536559 | 75..611 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:44 Download gff for
UFO12513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 525392..525436 | 30..74 | 100 | -> | Plus |
| arm_2L | 536023..536559 | 75..611 | 100 | == | Plus |
