UFO12514.5prime Sequence
756 bp (569 high quality bases) assembled on 2012-11-02
> UFO12514.5prime
AGTCGACATGGAGGACATTGAATATTTAGACGAGTACAAAGACTTGGTGC
TGCCAGGGATTAAATCGAGTGCTCCGACAGCATCTTCTGCCGGCGTTCCG
CGGCAGCGGCGCATTTCATCAGACTCGAGCAACTCGTCGTCGATTGATGC
GGACATTTTCCAAAAGCTCTTCCATGGCAAGTACCTCGACGACGAACTGC
TTAAGGAGGGCTCTGGCTCGAAGTCGCAGGACAGGCGTCGACGCCCCCCA
TCTCCCTCCTCCAGCGACGAGTCCAACGATGCCTTGGAAGCCCTCTTCTG
CGGGAAGAGCAGCCAGTCAAAGCTGAGCAAGAGGCGCGAACGGTATGAGT
CGTTCGATTCGGTGGACGACCTAGGAGAAGCCCTAATGCGTCCATCGCAC
AGGCTGACCGTACCCAAGCCCAGTACCTCTCAGGCAGGTTCCAAAAAGTC
ACAAGATGCTGCCCCACACAGAAGCATTAGCAATAGCAGCAGCAGCAACA
TTGCCATGTCATCTGGGCAAACTTATGCATGTCCAAAAAAAAAACAATTG
GCACAGCGATACGATGTGTATGGTCGAAACAACGTACATGAAGCCAAAAA
CAGCTCCGTGCCAAAACTATTGTATAATGATTGCGGTCTCAGTTACATTC
GAAACAAAAACGGCATCCGCACGCACGGGCGACACACATGACATGAGATA
CTGCATCAGAAGTCACACGCACACTCGATTTGGTTGCACTGCAGCACTGA
CGACTA
UFO12514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Su(var)2-HP2-RB | 5417 | CG12864-RB | 253..785 | 8..540 | 2665 | 100 | Plus |
Su(var)2-HP2-RA | 10289 | CG12864-RA | 253..785 | 8..540 | 2665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 14617427..14617748 | 375..54 | 1610 | 100 | Minus |
2R | 25286936 | 2R | 14617195..14617363 | 540..372 | 845 | 100 | Minus |
2R | 25286936 | 2R | 14617817..14617866 | 57..8 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..6768 | 422..500 | 131 | 64.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1041..1098 | 445..500 | 122 | 72.4 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1070..1125 | 443..500 | 122 | 72.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6789 | 469..500 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6810 | 469..500 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6843 | 444..500 | 115 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6861 | 468..500 | 111 | 81.8 | Plus |
UFO12514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:10 Download gff for
UFO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-HP2-RA | 172..718 | 1..547 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:49 Download gff for
UFO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-HP2-RA | 245..791 | 1..547 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:55 Download gff for
UFO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Su(var)2-HP2-RA | 245..791 | 1..547 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:55 Download gff for
UFO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 14617201..14617360 | 375..534 | 100 | <- | Minus |
2R | 14617428..14617745 | 57..374 | 100 | <- | Minus |
2R | 14617818..14617869 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:49 Download gff for
UFO12514.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 10504706..10504865 | 375..534 | 100 | <- | Minus |
arm_2R | 10504933..10505250 | 57..374 | 100 | <- | Minus |
arm_2R | 10505323..10505374 | 1..56 | 92 | | Minus |