Clone UFO12514 Report

Search the DGRC for UFO12514

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:125
Well:14
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptSu(var)2-HP2-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12514.5prime Sequence

756 bp (569 high quality bases) assembled on 2012-11-02

> UFO12514.5prime
AGTCGACATGGAGGACATTGAATATTTAGACGAGTACAAAGACTTGGTGC
TGCCAGGGATTAAATCGAGTGCTCCGACAGCATCTTCTGCCGGCGTTCCG
CGGCAGCGGCGCATTTCATCAGACTCGAGCAACTCGTCGTCGATTGATGC
GGACATTTTCCAAAAGCTCTTCCATGGCAAGTACCTCGACGACGAACTGC
TTAAGGAGGGCTCTGGCTCGAAGTCGCAGGACAGGCGTCGACGCCCCCCA
TCTCCCTCCTCCAGCGACGAGTCCAACGATGCCTTGGAAGCCCTCTTCTG
CGGGAAGAGCAGCCAGTCAAAGCTGAGCAAGAGGCGCGAACGGTATGAGT
CGTTCGATTCGGTGGACGACCTAGGAGAAGCCCTAATGCGTCCATCGCAC
AGGCTGACCGTACCCAAGCCCAGTACCTCTCAGGCAGGTTCCAAAAAGTC
ACAAGATGCTGCCCCACACAGAAGCATTAGCAATAGCAGCAGCAGCAACA
TTGCCATGTCATCTGGGCAAACTTATGCATGTCCAAAAAAAAAACAATTG
GCACAGCGATACGATGTGTATGGTCGAAACAACGTACATGAAGCCAAAAA
CAGCTCCGTGCCAAAACTATTGTATAATGATTGCGGTCTCAGTTACATTC
GAAACAAAAACGGCATCCGCACGCACGGGCGACACACATGACATGAGATA
CTGCATCAGAAGTCACACGCACACTCGATTTGGTTGCACTGCAGCACTGA
CGACTA

UFO12514.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
Su(var)2-HP2-RB 5417 CG12864-RB 253..785 8..540 2665 100 Plus
Su(var)2-HP2-RA 10289 CG12864-RA 253..785 8..540 2665 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14617427..14617748 375..54 1610 100 Minus
2R 25286936 2R 14617195..14617363 540..372 845 100 Minus
2R 25286936 2R 14617817..14617866 57..8 250 100 Minus
Blast to na_te.dros performed 2014-11-28 18:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6691..6768 422..500 131 64.6 Plus
roo 9092 roo DM_ROO 9092bp 1041..1098 445..500 122 72.4 Plus
roo 9092 roo DM_ROO 9092bp 1070..1125 443..500 122 72.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6789 469..500 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6810 469..500 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6786..6843 444..500 115 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6829..6861 468..500 111 81.8 Plus

UFO12514.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:10 Download gff for UFO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-HP2-RA 172..718 1..547 98 == Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:49 Download gff for UFO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-HP2-RA 245..791 1..547 98 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:55 Download gff for UFO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
Su(var)2-HP2-RA 245..791 1..547 98 == Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:55 Download gff for UFO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 14617201..14617360 375..534 100 <- Minus
2R 14617428..14617745 57..374 100 <- Minus
2R 14617818..14617869 1..56 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:49 Download gff for UFO12514.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10504706..10504865 375..534 100 <- Minus
arm_2R 10504933..10505250 57..374 100 <- Minus
arm_2R 10505323..10505374 1..56 92   Minus