UFO12517.5prime Sequence
1047 bp (941 high quality bases) assembled on 2012-11-02
> UFO12517.5prime
AGTCGACATGAACAACCAGCGATATGGCGGCATCCAGTGGATACAGCACC
ACGTTTCCGCGGGCGACTCCTCCGAGGTGGACATCCTGGAGTCGGATGGT
GGAGCAGGGGCCTCGGGTGAGGATCTGGACCATGTGGCGGCCGAGAATCT
TATATTCATGGCCCGCGACGGTCAGCTAAGTGAGATAATGGCTGCCAACG
AAGCTGGTAGAACGGTCCTGGTCACCGCCGACGGCACCACGGTGGCCTAT
GCGGAATCCTTCGACGATGACGCCCAGGTGGTCACCGAGGAGGTAATCAC
AGACGACTGGGTGCAGCACCAAGGCGCCGAGCGAGTGGAGATTGCTGCCG
AGCAGATAGCTGGGATTAGCAGCTCACAGGAACTGCTGGACATGGAGCAG
GATGAGTACACTGCGCTGAGGCCCTATCCCTGCGACTTTTGCAGTCGGCG
CTTTCGCAAGAAGGCCACCTTGAATAACCATATGCTGGCCCACCAAAATG
ATCGACCGCACCTCTGCAAGCTGTGTGGAGCGCGATTCTCACGACGAGCA
GAGCTCATTAGTCACTTCAAGGCCCACGCAGAGGCCCAGGATGCCGCCGA
TGCCGAGGCAGCAGTGGCGGCAGCCGATTCGTCTTCTGCCATTAAATTCG
AGCATCAGACGCAGCGGCAACTGGACGATCACTACTACGAGCAGGAATGG
CCACTCTTCCAACATCAACAGGAGCAGGAAAACGCGCAACAGAATGTCCA
TCAACAGCATCAGATTGTGAAAGAGGGCGGGATTCAGCTGGTGGCCAGTT
ACCCAGACACGGTAGCTCAACCAGCAGCTCCGTCGCGAGGCAGAATCAGT
CGGGTTGAAGCCCAAAGGAAGAAAGCAGCCAGTTCATTTGTGATTTCCGA
CAAAGTCGGTGGAGACTCTAGCATACATGAGCTGACGTCAGCTGGTACCG
TCGATATGCTGCGACGCTCTCAGCACTCGGCTGATCAGCACATCTGTGTC
GCATGCGATGCTGCCGAGGCAAGTCCACCTGATCCCGTGAATACGTC
UFO12517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7987-RB | 4416 | CG7987-RB | 304..1224 | 8..929 | 4430 | 99 | Plus |
| CG7987-RA | 4242 | CG7987-RA | 130..1050 | 8..929 | 4430 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14573906..14574483 | 914..333 | 2680 | 99 | Minus |
| 3R | 32079331 | 3R | 14574548..14574873 | 333..8 | 1630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:31:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ivk | 5402 | Ivk IVK 5402bp | 665..701 | 491..529 | 109 | 79.5 | Plus |
UFO12517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:10 Download gff for
UFO12517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RB | 261..1193 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:51 Download gff for
UFO12517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RA | 126..1058 | 1..935 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:58 Download gff for
UFO12517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7987-RA | 126..1058 | 1..935 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:58 Download gff for
UFO12517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14573880..14574482 | 334..935 | 98 | <- | Minus |
| 3R | 14574548..14574877 | 1..333 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:51 Download gff for
UFO12517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10399602..10400204 | 334..935 | 98 | <- | Minus |
| arm_3R | 10400270..10400599 | 1..333 | 99 | | Minus |
