UFO12519.5prime Sequence
1061 bp (965 high quality bases) assembled on 2012-11-02
> UFO12519.5prime
AGTCGACATGTCGGCGAAAGCAATCACCGAGGCCTCCGGCAAGGACATCC
TGAACCGCCATCTCAACACCCATGGCGCCGGCGCGGCCACTTGCCGTTTT
TCCACAGTAAATTCCACGACAGATTGGTCCAAGCTCGCCGTTGACCATCC
CTGGCTGCTGACCACGCCGCTGGTGTGCAAGCCCGATCAACTTATCAAGC
GCCGTGGAAAGCTGGGACTAATTGGCGTCAAGAAGAACTTTGAGCAGGTG
AAGCAGTGGATTGGCGAGCGCCTCAACAAGGACCAGAAGATCGGAAATGC
CGTGGGAAAGCTCAGGAACTTTATCATCGAACCTTTTGTGCCCCACACCG
ATGCTGAGGAGATGTACGTGTGCATCTACTCGCACCGCGCCGCAGACACC
ATTCTGTTCTACCACCAGGGTGGCGTGGATATTGGCGATGTGGATGCTAA
GGCCGTGAAGTTGGACGTACCTGTGAACTCTTCTCTGTCGTTAGCCGACG
TGAAGAGCAAGCTGTTGAAGGAGGTCAAGGACGCGGGCACCAAGGAGCGC
ATTGCCAAGTTTGTCAGCGCCTTGTACACGACCTATGTAGACCTGTATTT
CACATATCTGGAGATTAACCCTCTGGTGGTGACAGCCGACAATTTGTACA
TCTTGGATTTGGCGGCCAAGTTGGATTCGACAGCTGATTTCATCTGCCGT
CCCAAATGGGGCGAGATTGACTATCCACCTCCGTTTGGTCGAGATGCATA
TCCCGAGGAGGCCTACATCGCCGACTTGGACGCCAAGAGTGGAGCTTCGC
TGAAGCTGACGATCCTTAATCGTAATGGTCGTATCTGGACGATGGTGGCG
GGGCGGTGGCGCCAGTGTCATTTACTCGGACACATCTGCGATTTGGGTGG
AGCTCGAGCTGGCATTATGCGAATACGTGGGGCTCATCGGACAGCAGACG
TACGAGTACGCAAGACGATCTCAACCTAATGACTCCTCGCTAGCATCCGG
ATGCAAGTGCTGATACGAAGGGCATGTGAACTTACATGTGCTGCACCTCA
AGGATCACTAC
UFO12519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ATPCL-RF | 3913 | CG8322-RF | 200..1222 | 7..1014 | 4670 | 98 | Plus |
| ATPCL-RE | 4146 | CG8322-RE | 110..1132 | 7..1014 | 4670 | 98 | Plus |
| ATPCL-RD | 3874 | CG8322-RD | 110..1132 | 7..1014 | 4670 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15997453..15998003 | 903..353 | 2660 | 99.6 | Minus |
| 2R | 25286936 | 2R | 15998066..15998253 | 353..166 | 940 | 100 | Minus |
| 2R | 25286936 | 2R | 15999805..15999964 | 166..7 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:31:26 has no hits.
UFO12519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:11 Download gff for
UFO12519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RF | 191..1201 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:55 Download gff for
UFO12519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RD | 103..1114 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:02 Download gff for
UFO12519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ATPCL-RD | 103..1114 | 1..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:02 Download gff for
UFO12519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15997345..15998003 | 353..998 | 97 | <- | Minus |
| 2R | 15998067..15998252 | 167..352 | 100 | <- | Minus |
| 2R | 15999805..15999966 | 1..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:55 Download gff for
UFO12519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11884850..11885508 | 353..998 | 97 | <- | Minus |
| arm_2R | 11885572..11885757 | 167..352 | 100 | <- | Minus |
| arm_2R | 11887310..11887471 | 1..166 | 97 | | Minus |
