UFO12520.5prime Sequence
907 bp (750 high quality bases) assembled on 2012-11-02
> UFO12520.5prime
AGTCGACATGGACCCGTTTACTCAGCACATGCTCGAGAAGGCGGAACAGC
GCAGTCGCGCCCTTGGCATCAGCAATGCCAGCAAATTTCCGCTCGTCGAG
TGCAGCGTTCCAAGCTCCTCCGCCACCTCCGCATCCGGCGGGGATGCTGG
GGTCCTGGCACCGAGGAGCCGGTCGCCTGGAGGCCAGAGCGCGGCTAGCG
GCGGCGGCAAGGTCGTTACGTTGGGAAAGGCCACGCTGGAGGCGTCGCCG
GCGAAGCCGCTGCGTCACTATACGGCGGTAAACAAGGAAAACTTGGATAT
GGGCATAGAGATAAACATAACCACGGACAAGCCAATTGGGGTGCAAGTTG
AGATTCAGGAGCAGGAGGTGACAGATGACGAAGAGCAGGCGGAAGGAGGT
GCGCTAAATCCCCTGCTGGAGGCGGAACCAGTAAACCAGCCCCTAGCCAG
GCTAAGGGACACTTCCCGCAGCCGACTGCAACGCATGGGTGCCCTGTACT
CAAACACGGACGATCTATCCTCCCCAATCCACCGAACCGAGGGGCAGTTC
CATGTGACAACGGGTGAGGAAGAGGACTGCGGCAACCGTAGCAGCAGGCA
ACCAAAACAACGGTTGGGCAAACTGGCCGCCTTGGCGGATACCATCAATC
AGTGGGAGGATGACACGTCGCACCACGAAGTGCACAGACTGCTCGAGACT
CACGAACGATTGTCAGCGAGCGGAGTCAGTCATGCACAAGTATCACAGAG
AGCACATATGACAGTGTCTGGAGTCCCGACCATACCTGACACGAGGCACA
GAGTACACTCACAGCGCATCTCCCACCCGTGCTGCGGCTAGCGCGCATGT
AGATAGATGGTCACAGTCTGCTGCAGGGGAAGATACTGCACGGGTGTGAT
AAAAAAA
UFO12520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scra-RA | 4147 | CG2092-RA | 243..931 | 8..696 | 3445 | 100 | Plus |
| scra-RC | 2260 | CG2092-RC | 326..1014 | 8..696 | 3445 | 100 | Plus |
| scra-RB | 4311 | CG2092-RB | 326..1014 | 8..696 | 3445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7590945..7591301 | 340..696 | 1785 | 100 | Plus |
| 2R | 25286936 | 2R | 7590565..7590884 | 23..342 | 1600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:31:33 has no hits.
UFO12520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:12 Download gff for
UFO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RA | 319..1019 | 1..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:59 Download gff for
UFO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 319..1019 | 1..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:06 Download gff for
UFO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scra-RB | 319..1019 | 1..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:06 Download gff for
UFO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7590568..7590882 | 26..340 | 100 | -> | Plus |
| 2R | 7590946..7591306 | 341..703 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:59 Download gff for
UFO12520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3478073..3478387 | 26..340 | 100 | -> | Plus |
| arm_2R | 3478451..3478811 | 341..703 | 99 | == | Plus |
