UFO12521.5prime Sequence
1007 bp (860 high quality bases) assembled on 2012-11-02
> UFO12521.5prime
AGTCGACATGGATCAATTTCAAACTTCACTAAATCCGCGGAAACTCGAGC
TTCTGGAGTCTCGAATTACTGGAGTGCGGATGTCCCCCGGCGCCCATTTG
CAGATGTCCCCGCAGAACACTTCGTCCCTAAGTCAACACCATCCACATCA
ACAGCAACAGTTACAACCCCCACAGCAGCAACAACAGCATTTCCCTAACC
ATCACAGCGCCCAGCAACAGTCGCAGCAGCAGCAGCAACAGGAGCAACAG
AATCCCCAGCAGCAGGCGCAACAGCAGCAGCAGATACTCCCACATCAACA
TTTGCAGCACCTGCACAAGCATCCGCATCAGCTGCAACTGCATCAGCAGC
AGCAACAACAACTCCACCAGCAACAGCAGCAACACTTCCACCAGCAGTCG
CTGCAAGGGCTGCATCAGGGTAGCAGCAATCCGGATTCGAATATGAGCAC
TGGCTCCTCGCATAGCGAGAAGGATGTCAATGATATGCTGAGTGGCGGTG
CAGCAACGCCAGGAGCTGCAGCAGCAGCGATTCAACAGCAACATCCCGCC
TTTGCGCCCACACTGGGAATGCAGCAACCACCGCCGCCCCCACCTCAACA
CTCCAATAATGGAGGCGAGATGGGCTACTTGTCGGCAGGCACGACCACGA
CGACGTCGGTGTTAACGGAAGGCAAGCCTCGCACGCCAGTGGAGCGGAAA
CGGAAGCGAAAAATGCCTCCATGTGCCACTAGTGCGGATGACGCGGGGAG
TGGCGGTGGCTCTGGCGGATCAGGAGCAACCGTTGTTAACAACAGCAGCC
TGAAGGGCAAATCATTGGCCTTTCGTGATATGCCCCACGGTAAACATGAG
CCTGATCTGGGCGATCGTCTGGGAGGATTTGCAGAAGCGAGTAGAGCCGG
TGGCGCCGGAGCGGGGAGTGCGCTGTTCCGTTCTGGAAGCGGTGGCCGCA
AGCGCCCCGCCTGTATGCTGCCAGTCAGCGACAACAGGAAGATTCAACGA
ACTATTT
UFO12521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tlk-RJ | 4882 | CG34412-RJ | 517..1523 | 8..1007 | 4515 | 97.4 | Plus |
tlk-RH | 5890 | CG34412-RH | 517..1523 | 8..1007 | 4515 | 97.4 | Plus |
tlk-RF | 6513 | CG34412-RF | 299..1305 | 8..1007 | 4515 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3781654..3782577 | 79..993 | 3855 | 96.2 | Plus |
X | 23542271 | X | 3721576..3721647 | 8..79 | 360 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2545 | 134..363 | 465 | 68 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2576..2988 | 129..545 | 390 | 58.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6951 | 134..360 | 387 | 66.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..7016 | 134..395 | 375 | 63 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2781 | 134..545 | 367 | 59.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..7200 | 134..543 | 306 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6869..7112 | 134..383 | 218 | 59.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2428 | 500..600 | 135 | 64.4 | Plus |
UFO12521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:13 Download gff for
UFO12521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tlk-RJ | 264..1274 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:03 Download gff for
UFO12521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tlk-RF | 295..1305 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:10 Download gff for
UFO12521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tlk-RF | 295..1305 | 1..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:10 Download gff for
UFO12521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3721572..3721647 | 1..79 | 96 | -> | Plus |
X | 3781655..3782589 | 80..1007 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:03 Download gff for
UFO12521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3615605..3615680 | 1..79 | 96 | -> | Plus |
arm_X | 3675688..3676622 | 80..1007 | 97 | | Plus |