UFO12523.5prime Sequence
1022 bp (807 high quality bases) assembled on 2012-11-02
> UFO12523.5prime
AGTCGACATGGCACCAACAATCACTGACAATTGCGAATTTGAATGTGCAA
CTGTTGAGGCAACAACAACATCAGCGATTACCATCGGTGATTCCGATAAT
TTCGATAGTTCGGCCATTGGTGGCAGCGGCGATAACTTCGAAGAATCGAA
TGAACTGCATTTGAACGGACAGCAGGATCAGGATGTTCAGGAGGAGCAGC
AGCAGCAAATGCCATGGGAGGCACCTGGAAAACAGGGACTCTACGATCCC
CAGAACGAGCACGAGGCCTGCGGAGTCGGTTTTATCGTGGCCATCGATGG
CAAACGCTCTCACAAGATTCTACGTGATGCCCAGACCCTCTCAGAACGGA
TGAATCACCGCGGCGCCTGCGCCTGCGACAATGACACCGGCGATGGCGCT
GGCGTCTTGGCTTCCATTCCTCACGGACTCTACTCGAAGGCTCTTGCCAA
GCAGGGTGTAACCTTGCCGGAGTTGGGTGACTATGCCACGGGCATTTTCT
ACCTGGATGAGGCTCAGCATGCAGCTGCCGAGAAGGAGTTCGATGATCTG
GCCAAGAGTCTTGGATTGGAGGTGATTGCCTGGCGCACTGTGCCGTCCAA
TCAGTCGGCCATTGGCGTGGTGGCCCGCAAGTCGGAACCCCTGTCCCGTC
AGTGTTGTGCGCGTCAGCGGAGCGATGAGAAGCCTCGACGCAGTTTCGCC
TAGAGAGGCAGCATGAGTGATCAGCGGGCGACGGTCTACATCTGCTCCTG
TCGATCGCACAGTGTCTACAGGTCTCTCACTCGACAGCTGTGGATACTAC
ACTGACTGAGATCAGAGTCGAACTATTGCATGTCATACTCGTTCTCACAC
CTTCAGTGGAAGGCTCATCTCTGCGAGTCTGCAAATGTGAATCAACCCTC
GGAATGACTCATGAGCCCGAGTGCATGCATCGATCTGTGGACCTGAACTG
ACAGTGACGATCTCATCGACTCATGGTGGATCCATGCCGAGTTCGACGGA
CTGCATGAAGAATCGAGTCAGC
UFO12523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9674-RH | 7274 | CG9674-RH | 252..1085 | 8..806 | 3355 | 95.8 | Plus |
| CG9674-RG | 7436 | CG9674-RG | 252..1085 | 8..806 | 3355 | 95.8 | Plus |
| CG9674-RF | 7465 | CG9674-RF | 281..1114 | 8..806 | 3355 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16799484..16799792 | 316..8 | 1545 | 100 | Minus |
| 3L | 28110227 | 3L | 16796130..16796337 | 652..445 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 16799045..16799174 | 444..315 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6877 | 123..265 | 126 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2859 | 123..212 | 112 | 60.9 | Plus |
UFO12523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:08 Download gff for
UFO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RD | 352..1027 | 1..671 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:39 Download gff for
UFO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 274..949 | 1..671 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:47 Download gff for
UFO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9674-RF | 274..949 | 1..671 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:47 Download gff for
UFO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16796106..16796337 | 445..671 | 97 | <- | Minus |
| 3L | 16799045..16799172 | 317..444 | 100 | <- | Minus |
| 3L | 16799484..16799795 | 1..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:39 Download gff for
UFO12523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16789206..16789437 | 445..671 | 97 | <- | Minus |
| arm_3L | 16792145..16792272 | 317..444 | 100 | <- | Minus |
| arm_3L | 16792584..16792895 | 1..316 | 98 | | Minus |
