Clone UFO12525 Report

Search the DGRC for UFO12525

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:125
Well:25
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG9297-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12525.5prime Sequence

1074 bp (916 high quality bases) assembled on 2012-11-02

> UFO12525.5prime
AGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGACTAACGTTAA
TCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTCGGACCAAGC
GAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGAATTGAAAAC
AGATGGTGTCAGGGATGGATCTGGAGAACTGCAATCCGATCAGCCACGTG
GGGACGACGACGATGACGACGATGATGAGGACGCGAAAAGTGCCAACGAT
TTGGATGGAGATGGAATACCCGATGACGAGGACGATGATATCGATGGGGA
CGGCATTCCGAACGAAAAGGACGATGATATCGATGGAGATGGCATACCGA
ACGACGAGGATGATGACATCGATGGCGATGGCATCCCGAATGAAGATGAC
GACGATATTGATGGGGATGGTGTGCCCAACTCCAAGGACGAGGACATCGA
TGGGGATGGTGTGCCCAACTCCAAGGACGAAGACATCGATGGCGATGGCA
AGGCAAATCACGAGGATGATGATCTAGATGGTGATGGCACTCCAAATCAT
GAGGACGAAGATCTCGACGGGGACGGTGTGCCCAACGAGGAAGATGATGA
CCTCGAGAGTGATGGCAAAATAAATCACGAGGATGAAAGACCTCGATGGT
GATGGAGTGAAAAATGACGAAGACGAGGGATCTGGATGGAGATGGCAAAG
TAAATCACGAGGACGAAAGATTGTTGATGGAGATGGCGTGAAGAATGAAA
AGGACGACGATTTGGGATGGCGATGGTACCAACAATTCTCAGGATGAAGA
CCTAGATGGTGATGGTGTGCCAAATGAAAAGGATGACGATCTGGATGGAG
ATGGCATCCTGAACGAGCACGGTGGTGATTTGGATGGCCGATGGAGTTCC
CAATGAACACGATCCACAAGGATAGCCGGTTGAAGAATGCCGATGATGAT
GATGACGACGATGTGTGAGGAATGAACAGGAAGGCGGTCCAGAATGTAGC
CAAACGGTGGAGGTAATGCCTGCCTCTTGTTTCTCGGACATGTGGAGGCC
TCCCACCAAGTTCCCGCCCGGAAA

UFO12525.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9297-RA 4014 CG9297-RA 231..1204 8..994 4460 97.7 Plus
CG9297-RE 4134 CG9297-RE 570..1324 227..994 3365 97 Plus
CG9297-RD 4127 CG9297-RD 563..1317 227..994 3365 97 Plus
CG9297-RE 4134 CG9297-RE 285..504 8..227 1100 100 Plus
CG9297-RA 4014 CG9297-RA 502..748 318..564 440 79.5 Plus
CG9297-RA 4014 CG9297-RA 541..787 279..525 440 79.5 Plus
CG9297-RE 4134 CG9297-RE 622..868 318..564 440 79.5 Plus
CG9297-RE 4134 CG9297-RE 661..907 279..525 440 79.5 Plus
CG9297-RA 4014 CG9297-RA 477..994 332..854 435 73.8 Plus
CG9297-RA 4014 CG9297-RA 555..1072 254..776 435 73.8 Plus
CG9297-RE 4134 CG9297-RE 597..1114 332..854 435 73.8 Plus
CG9297-RE 4134 CG9297-RE 675..1192 254..776 435 73.8 Plus
CG9297-RA 4014 CG9297-RA 658..1074 279..697 395 73.9 Plus
CG9297-RE 4134 CG9297-RE 778..1194 279..697 395 73.9 Plus
CG9297-RA 4014 CG9297-RA 594..877 254..537 355 75.9 Plus
CG9297-RE 4134 CG9297-RE 714..997 254..537 355 75.9 Plus
CG9297-RA 4014 CG9297-RA 502..918 435..856 320 73.1 Plus
CG9297-RE 4134 CG9297-RE 622..1038 435..856 320 73.1 Plus
CG9297-RA 4014 CG9297-RA 477..760 371..655 305 74.9 Plus
CG9297-RE 4134 CG9297-RE 597..880 371..655 305 74.9 Plus
CG9297-RA 4014 CG9297-RA 894..1074 320..500 185 73.5 Plus
CG9297-RE 4134 CG9297-RE 1014..1194 320..500 185 73.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13774452..13774737 227..512 1430 100 Plus
3R 32079331 3R 13775530..13775697 791..963 595 93.6 Plus
3R 32079331 3R 13773934..13774018 68..152 425 100 Plus
3R 32079331 3R 13774504..13774684 318..498 425 82.3 Plus
3R 32079331 3R 13774543..13774723 279..459 425 82.3 Plus
3R 32079331 3R 13774309..13774386 150..227 390 100 Plus
3R 32079331 3R 13775091..13775169 551..629 365 97.5 Plus
3R 32079331 3R 13775234..13775305 637..709 315 98.6 Plus
3R 32079331 3R 13772350..13772410 8..68 305 100 Plus
3R 32079331 3R 13775394..13775459 724..790 285 98.5 Plus
3R 32079331 3R 13774479..13774606 332..459 265 80.5 Plus
3R 32079331 3R 13774557..13774684 254..381 265 80.5 Plus
3R 32079331 3R 13774504..13774655 435..586 250 77.6 Plus
3R 32079331 3R 13774479..13774737 371..629 245 73 Plus
3R 32079331 3R 13774596..13774725 254..383 215 77.7 Plus
3R 32079331 3R 13774798..13774837 512..551 200 100 Plus
3R 32079331 3R 13775228..13775293 791..856 195 86.4 Plus
Blast to na_te.dros performed on 2014-11-28 18:32:03 has no hits.

UFO12525.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:15 Download gff for UFO12525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1192 8..981 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:15 Download gff for UFO12525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1192 8..981 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:21 Download gff for UFO12525.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9297-RA 231..1192 8..981 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:21 Download gff for UFO12525.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13772350..13772410 8..68 100 -> Plus
3R 13773935..13774018 69..152 100 -> Plus
3R 13774312..13774386 153..227 100 -> Plus
3R 13774453..13774737 228..512 100 -> Plus
3R 13774799..13774837 513..551 100 -> Plus
3R 13775092..13775169 552..629 97 -> Plus
3R 13775228..13775305 630..709 97 -> Plus
3R 13775382..13775459 710..790 95 -> Plus
3R 13775530..13775697 791..963 95 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:15 Download gff for UFO12525.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9598072..9598132 8..68 100 -> Plus
arm_3R 9599657..9599740 69..152 100 -> Plus
arm_3R 9600034..9600108 153..227 100 -> Plus
arm_3R 9600175..9600459 228..512 100 -> Plus
arm_3R 9600521..9600559 513..551 100 -> Plus
arm_3R 9600814..9600891 552..629 97 -> Plus
arm_3R 9600950..9601027 630..709 97 -> Plus
arm_3R 9601104..9601181 710..790 95 -> Plus
arm_3R 9601252..9601419 791..963 95 == Plus