UFO12525.5prime Sequence
1074 bp (916 high quality bases) assembled on 2012-11-02
> UFO12525.5prime
AGTCGACATGGGGCGGCTAACCATTTGGTTCCTACTGGGACTAACGTTAA
TCGCCGTTTCCAATAATGTTGGGTTTGTCAATGCCGATGTCGGACCAAGC
GAATCAGAATGTCGACCCTACATTGAAAAGGCTATTCATGAATTGAAAAC
AGATGGTGTCAGGGATGGATCTGGAGAACTGCAATCCGATCAGCCACGTG
GGGACGACGACGATGACGACGATGATGAGGACGCGAAAAGTGCCAACGAT
TTGGATGGAGATGGAATACCCGATGACGAGGACGATGATATCGATGGGGA
CGGCATTCCGAACGAAAAGGACGATGATATCGATGGAGATGGCATACCGA
ACGACGAGGATGATGACATCGATGGCGATGGCATCCCGAATGAAGATGAC
GACGATATTGATGGGGATGGTGTGCCCAACTCCAAGGACGAGGACATCGA
TGGGGATGGTGTGCCCAACTCCAAGGACGAAGACATCGATGGCGATGGCA
AGGCAAATCACGAGGATGATGATCTAGATGGTGATGGCACTCCAAATCAT
GAGGACGAAGATCTCGACGGGGACGGTGTGCCCAACGAGGAAGATGATGA
CCTCGAGAGTGATGGCAAAATAAATCACGAGGATGAAAGACCTCGATGGT
GATGGAGTGAAAAATGACGAAGACGAGGGATCTGGATGGAGATGGCAAAG
TAAATCACGAGGACGAAAGATTGTTGATGGAGATGGCGTGAAGAATGAAA
AGGACGACGATTTGGGATGGCGATGGTACCAACAATTCTCAGGATGAAGA
CCTAGATGGTGATGGTGTGCCAAATGAAAAGGATGACGATCTGGATGGAG
ATGGCATCCTGAACGAGCACGGTGGTGATTTGGATGGCCGATGGAGTTCC
CAATGAACACGATCCACAAGGATAGCCGGTTGAAGAATGCCGATGATGAT
GATGACGACGATGTGTGAGGAATGAACAGGAAGGCGGTCCAGAATGTAGC
CAAACGGTGGAGGTAATGCCTGCCTCTTGTTTCTCGGACATGTGGAGGCC
TCCCACCAAGTTCCCGCCCGGAAA
UFO12525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9297-RA | 4014 | CG9297-RA | 231..1204 | 8..994 | 4460 | 97.7 | Plus |
CG9297-RE | 4134 | CG9297-RE | 570..1324 | 227..994 | 3365 | 97 | Plus |
CG9297-RD | 4127 | CG9297-RD | 563..1317 | 227..994 | 3365 | 97 | Plus |
CG9297-RE | 4134 | CG9297-RE | 285..504 | 8..227 | 1100 | 100 | Plus |
CG9297-RA | 4014 | CG9297-RA | 502..748 | 318..564 | 440 | 79.5 | Plus |
CG9297-RA | 4014 | CG9297-RA | 541..787 | 279..525 | 440 | 79.5 | Plus |
CG9297-RE | 4134 | CG9297-RE | 622..868 | 318..564 | 440 | 79.5 | Plus |
CG9297-RE | 4134 | CG9297-RE | 661..907 | 279..525 | 440 | 79.5 | Plus |
CG9297-RA | 4014 | CG9297-RA | 477..994 | 332..854 | 435 | 73.8 | Plus |
CG9297-RA | 4014 | CG9297-RA | 555..1072 | 254..776 | 435 | 73.8 | Plus |
CG9297-RE | 4134 | CG9297-RE | 597..1114 | 332..854 | 435 | 73.8 | Plus |
CG9297-RE | 4134 | CG9297-RE | 675..1192 | 254..776 | 435 | 73.8 | Plus |
CG9297-RA | 4014 | CG9297-RA | 658..1074 | 279..697 | 395 | 73.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 778..1194 | 279..697 | 395 | 73.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 594..877 | 254..537 | 355 | 75.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 714..997 | 254..537 | 355 | 75.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 502..918 | 435..856 | 320 | 73.1 | Plus |
CG9297-RE | 4134 | CG9297-RE | 622..1038 | 435..856 | 320 | 73.1 | Plus |
CG9297-RA | 4014 | CG9297-RA | 477..760 | 371..655 | 305 | 74.9 | Plus |
CG9297-RE | 4134 | CG9297-RE | 597..880 | 371..655 | 305 | 74.9 | Plus |
CG9297-RA | 4014 | CG9297-RA | 894..1074 | 320..500 | 185 | 73.5 | Plus |
CG9297-RE | 4134 | CG9297-RE | 1014..1194 | 320..500 | 185 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13774452..13774737 | 227..512 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 13775530..13775697 | 791..963 | 595 | 93.6 | Plus |
3R | 32079331 | 3R | 13773934..13774018 | 68..152 | 425 | 100 | Plus |
3R | 32079331 | 3R | 13774504..13774684 | 318..498 | 425 | 82.3 | Plus |
3R | 32079331 | 3R | 13774543..13774723 | 279..459 | 425 | 82.3 | Plus |
3R | 32079331 | 3R | 13774309..13774386 | 150..227 | 390 | 100 | Plus |
3R | 32079331 | 3R | 13775091..13775169 | 551..629 | 365 | 97.5 | Plus |
3R | 32079331 | 3R | 13775234..13775305 | 637..709 | 315 | 98.6 | Plus |
3R | 32079331 | 3R | 13772350..13772410 | 8..68 | 305 | 100 | Plus |
3R | 32079331 | 3R | 13775394..13775459 | 724..790 | 285 | 98.5 | Plus |
3R | 32079331 | 3R | 13774479..13774606 | 332..459 | 265 | 80.5 | Plus |
3R | 32079331 | 3R | 13774557..13774684 | 254..381 | 265 | 80.5 | Plus |
3R | 32079331 | 3R | 13774504..13774655 | 435..586 | 250 | 77.6 | Plus |
3R | 32079331 | 3R | 13774479..13774737 | 371..629 | 245 | 73 | Plus |
3R | 32079331 | 3R | 13774596..13774725 | 254..383 | 215 | 77.7 | Plus |
3R | 32079331 | 3R | 13774798..13774837 | 512..551 | 200 | 100 | Plus |
3R | 32079331 | 3R | 13775228..13775293 | 791..856 | 195 | 86.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:03 has no hits.
UFO12525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:15 Download gff for
UFO12525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1192 | 8..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:15 Download gff for
UFO12525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1192 | 8..981 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:21 Download gff for
UFO12525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9297-RA | 231..1192 | 8..981 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:21 Download gff for
UFO12525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13772350..13772410 | 8..68 | 100 | -> | Plus |
3R | 13773935..13774018 | 69..152 | 100 | -> | Plus |
3R | 13774312..13774386 | 153..227 | 100 | -> | Plus |
3R | 13774453..13774737 | 228..512 | 100 | -> | Plus |
3R | 13774799..13774837 | 513..551 | 100 | -> | Plus |
3R | 13775092..13775169 | 552..629 | 97 | -> | Plus |
3R | 13775228..13775305 | 630..709 | 97 | -> | Plus |
3R | 13775382..13775459 | 710..790 | 95 | -> | Plus |
3R | 13775530..13775697 | 791..963 | 95 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:15 Download gff for
UFO12525.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9598072..9598132 | 8..68 | 100 | -> | Plus |
arm_3R | 9599657..9599740 | 69..152 | 100 | -> | Plus |
arm_3R | 9600034..9600108 | 153..227 | 100 | -> | Plus |
arm_3R | 9600175..9600459 | 228..512 | 100 | -> | Plus |
arm_3R | 9600521..9600559 | 513..551 | 100 | -> | Plus |
arm_3R | 9600814..9600891 | 552..629 | 97 | -> | Plus |
arm_3R | 9600950..9601027 | 630..709 | 97 | -> | Plus |
arm_3R | 9601104..9601181 | 710..790 | 95 | -> | Plus |
arm_3R | 9601252..9601419 | 791..963 | 95 | == | Plus |