UFO12530.5prime Sequence
1053 bp (943 high quality bases) assembled on 2012-11-02
> UFO12530.5prime
AGTCGACATGATGTTCACACGTGCCCAGGTGCGCAAACAGAAGACCAGCA
ATTCGAGCAGCCAGCGACCTCGGAGCTCGGGAGGATCGACCCGCCATGAG
ACACGCTACAAACAGAGCTCCACCAGCAGTAGTGGAGCAGGCAGTGGCTT
AAGTGGCGCCAGTGGAGCCTCCGGCGCCCGAAGGGATCAGTACCGGGACA
GGGATCACTATGGAAAGCATTCCTTTGAGCTGCCACGCCAGCACTCCAAG
GAGGAGGCCTATCATCGAGATCGGGAGAGCAGTGCGGGTGGTGTCGACAG
GGGCGAAAGGAGTGGCATTGGTGGCAATGGTGGTGGCGTCACCGGCGGTG
GCGTCTACGTGGACAGAAGGACTCGCCCGAGGAGCATAACCAATCGACGC
GGGGCCATCAAGCATCAAAAAACCCACGACATCAATGGTCATCGTTTTGT
GGCCAAATTCTTTCGCCAGCCCACCTTTTGTGCCTTCTGCAATTTGTTTC
TCTGGGGATTTGGCAAACAGGGCTATCAGTGCATAATTTGCCAAACGGTG
GTGCACAAAAAGTGCCATGACAAGCTCCTGGGCAAATGTTCCGGTTCCGT
CTTCACCTCAGCCAGTACAATTTTACTACGCGAACGTTTCAAGATCGATA
TGCCACATCGGTTTAAGCCACACACTTTTATGTCGCCGACTTTTTGTGAC
CATTGCGGCTCATTAATGGGGTGGATTTTTTATTCAGGGCCTCAAATGCG
AAGAATGTGACGTGAATTGTCACAAGAAATGCGAACGGCTCACGGCCAAT
TTATGCGGTGTCAATCAGAAACTCATCGTTGAGGCACTCAACCACGTGAA
GCGAGGAGCCCGAGAGCCCGTGACTCACCCAGCCACTCCGCCCAGTTTGA
TTCCAGCCTATAAATCGAGGCCAGCGAGGACACGATGAAACATCATATAA
CTATTTCCCATTCCAAAATCCGGACGTTCACTGCGCTGAGCCACAGTAAT
GACTAGATTTAGAATTATCGGTAAGATGATTCCACTTTCTGCGGTCTTGA
CAA
UFO12530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkcdelta-RD | 3043 | CG42349-RD | 669..1706 | 8..1041 | 4745 | 97.8 | Plus |
| Pkcdelta-RC | 3219 | CG10524-RA | 845..1882 | 8..1041 | 4745 | 97.8 | Plus |
| Pkcdelta-RE | 6288 | CG42349-RE | 4844..4951 | 937..1041 | 240 | 85.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12436011..12436332 | 99..420 | 1610 | 100 | Plus |
| X | 23542271 | X | 12436858..12436987 | 623..753 | 605 | 99.2 | Plus |
| X | 23542271 | X | 12436538..12436653 | 421..536 | 580 | 100 | Plus |
| X | 23542271 | X | 12450283..12450387 | 752..856 | 525 | 100 | Plus |
| X | 23542271 | X | 12435252..12435344 | 8..100 | 465 | 100 | Plus |
| X | 23542271 | X | 12436712..12436797 | 537..622 | 430 | 100 | Plus |
| X | 23542271 | X | 12450793..12450867 | 854..927 | 215 | 94.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:10 has no hits.
UFO12530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:16 Download gff for
UFO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RD | 619..1673 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:19 Download gff for
UFO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 840..1894 | 1..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:24 Download gff for
UFO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkcdelta-RC | 840..1894 | 1..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:24 Download gff for
UFO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12450285..12450386 | 754..855 | 100 | -> | Plus |
| X | 12450795..12450878 | 856..937 | 92 | -> | Plus |
| X | 12435247..12435344 | 1..100 | 96 | -> | Plus |
| X | 12436013..12436332 | 101..420 | 100 | -> | Plus |
| X | 12436538..12436653 | 421..536 | 100 | -> | Plus |
| X | 12436712..12436797 | 537..622 | 100 | -> | Plus |
| X | 12436858..12436987 | 623..753 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:19 Download gff for
UFO12530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12329280..12329377 | 1..100 | 96 | -> | Plus |
| arm_X | 12330046..12330365 | 101..420 | 100 | -> | Plus |
| arm_X | 12330571..12330686 | 421..536 | 100 | -> | Plus |
| arm_X | 12330745..12330830 | 537..622 | 100 | -> | Plus |
| arm_X | 12330891..12331020 | 623..753 | 99 | -> | Plus |
| arm_X | 12344318..12344419 | 754..855 | 100 | -> | Plus |
| arm_X | 12344828..12344911 | 856..937 | 92 | -> | Plus |
