UFO12531.5prime Sequence
1069 bp (970 high quality bases) assembled on 2012-11-02
> UFO12531.5prime
AGTCGACATGGTGAATGTACCACCGCTGCTCTGCAGCACCCCCCCGCCCA
TCGATTTTGGTGAGGAAGACGACGATTCCGGTTTACAATCCACCATCCAT
TTGGACGAGGGTGACGAATACTCAGATTTTGGCTTAGTCAGCAGCTCGAA
AGAACCCCCTCCACCACCAGATCCCGTGGAGGAATTTCGAGAAAAGCCAC
CTGATTTGCTGGAAGACAAACAAACCGTCGAGGCATTTAATTACCAGGTG
AAACAGAAGATGGATTACGATGTTTTCGAGGAAACAGCACCGCCGACGCC
GCCTCCGTTGAGCTTGGAACTGGATGATGAGGAACTGGAGGAGCATGTGC
CCTCCCTTAAGTTGGACAGTCTAAGTCTCTATTCCACGGAAAGCGTTTCT
GCCGCCTCCACACTCTCACCGGTTGCGGAGACTAGTGCAGTTGCTCCGCC
GGCTATGCAAACAACCAAAGCCCATATCCTCAGCCACCAAGTCACGCTGG
AGGATGTGTCCGATGACAGCGACGAGGAGTGCTCGCCAAAGAAGCCCAAA
GAACTATTTATACGCGAGGGAGCTGTGGATTTCTTTGCCATAGAGGTATT
GGCCACTCCAACCCTACCATATGGAGAAGGCTTTTCGGAGGAGAATGTGG
ATACAGGGAAAGGAGAATACGTAGAGAATACCTCCCAGCCAGAAGAAAGC
TTTAGAAGTTTGGAAGCCCAGGAGGAAAGTTCAAATACCTTAGAAAAGCC
TATGGAAAATCAAAGCCGTGGCTTATCAAATCCTCCAAATCAGGAGGAAT
CCCCTCACCAATGGGGTGAACCAGCAAATAGTGATACATATTCATTTACA
AATCTTGATGCGACGCCAAAAGACTTAGTACACAAAGAAATTGTTCCCGA
AATGCAGAGCAGAGATGATGATGACTTCGTGACTTGCGATTCTCAGCAGC
AGACCCACTAGAATCACGAGATTCACGTCTGCTTGAAACCTCTAGCATCA
TCCGGACGATCTCAACTCTAGAGTAGACGCTCTAGCAAGAAGAATCCTCT
AGTTACTCCTGCAGAACGA
UFO12531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Afti-RB | 3923 | CG8538-RB | 409..1502 | 8..1065 | 4615 | 96.6 | Plus |
| Afti-RD | 5111 | CG8538-RD | 409..1502 | 8..1065 | 4615 | 96.6 | Plus |
| Afti-RC | 4225 | CG8538-RC | 409..1502 | 8..1065 | 4615 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14325325..14326080 | 906..151 | 3780 | 100 | Minus |
| 3R | 32079331 | 3R | 14326137..14326281 | 152..8 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:32:16 has no hits.
UFO12531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:17 Download gff for
UFO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8538-RB | 402..1375 | 8..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:22 Download gff for
UFO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..1382 | 8..971 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:27 Download gff for
UFO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Afti-RC | 409..1382 | 8..971 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:27 Download gff for
UFO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14326132..14326281 | 8..155 | 98 | | Minus |
| 3R | 14325299..14326075 | 156..929 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:22 Download gff for
UFO12531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10151021..10151797 | 156..929 | 99 | -> | Minus |
| arm_3R | 10151854..10152003 | 8..155 | 98 | | Minus |
