UFO12533.5prime Sequence
720 bp (639 high quality bases) assembled on 2012-11-02
> UFO12533.5prime
AGTCGACATGTCCGACGAGGAGGAGGATTCCGTGTCCGAGGGCTTCTCGG
CCAGCGAGGATGAATGGAAGCCGAGCAAGGACGTCAAGGGAGGCGAGTCC
TCCGACGATGATGACAGCGATTTCGATGAGCTCCAGGCGGAGGGAGGAGC
AGCGGGCTCCAGTGGACGATCCTCCGCTGTAGCGGGAAAAAGAGGCGATC
ACAAGGCACCAAGTGGCATCAAGGGCTCTTCGGTGAAGAAACGCAAGCCC
ACTGGTCAATCACTTCGCTCCAAGCTGTACAATAAGTACCGACCGCCTCC
AAAGACCTTTCCCACTTCTCCTTCGCAACAGAAGGAGAACACTCCGCGGG
CTTCGGGTTCAAAAAACGCCAAAACGCCCAATGAAAGCGGTGCACGGAAT
CAGCACGGTCCTGCTGATTCCAGCAGCGAATCCAGTGTGGAAGACTACCT
AGTAAATCCAGCCGATCTTGATCTGCACTCAACCTTCTTTGCCGGCGGCC
AAAAAGAGAAGTCACCGGCGCCCCAATTCGATTGTAATGCGGGCATCACA
AATCTTTCAGACTCTGGATCGGAGGATAACAACGAGAGCAGCTTCAAAGG
TGTATCGCGAGCTGGAGGAAAGGCCAGCGGCGGGTGGAAAGGCGCAGACC
TACCACACACGGTGTACGGGAACTGCTTTGTGTGTGTGATACGTGGGTTG
CTTTTTTTTCTGATTCTTGT
UFO12533.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mus210-RA | 4275 | CG8153-RA | 271..858 | 8..595 | 2940 | 100 | Plus |
| mus210-RD | 1390 | CG8153-RD | 271..861 | 8..595 | 2900 | 99.5 | Plus |
| mus210-RC | 4683 | CG8153-RC | 271..861 | 8..595 | 2900 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15312035..15312435 | 195..595 | 2005 | 100 | Plus |
| 2R | 25286936 | 2R | 15311780..15311967 | 8..195 | 940 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:32:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 4572..4625 | 485..432 | 108 | 66.7 | Minus |
UFO12533.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:17 Download gff for
UFO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 289..889 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:25 Download gff for
UFO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 265..865 | 1..604 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:31 Download gff for
UFO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mus210-RA | 265..865 | 1..604 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:31 Download gff for
UFO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15311774..15311967 | 1..195 | 97 | -> | Plus |
| 2R | 15312036..15312435 | 196..595 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:25 Download gff for
UFO12533.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11199279..11199472 | 1..195 | 97 | -> | Plus |
| arm_2R | 11199541..11199940 | 196..595 | 100 | == | Plus |
