UFO12534.5prime Sequence
1074 bp (933 high quality bases) assembled on 2012-11-02
> UFO12534.5prime
AGTCGACATGGCACGGTGGCTGCTTAACTCGTTTTCGCTGATCCTGCTCC
TGGCAGTGTGCAGCCTACAGGCGCGCCTGATCCTTCCCTTATCCCTGGAC
GATGGACAGCTGGAGACCAAGGGAGCAGCCCTCTTTGCCACCTCCCGCGT
GGATGATAATAGTGCCGGCAATTACCGACTGCCAAATACAACGGAACCGG
AGTCCTACAACGTGGAACTCTGGACCAATGTCCATAATGGCGATACCGAA
TTCAATGGCACCGTCAATATCGATATCCGGGTTTTGAACGAGACATCGAA
TATTACGCTTCACTATCGCCAGACGTCGAATTTTGAAGCGACGATTATCA
GCCGGGATGTGGCCACGCCCACGGCAATTCCACTCACTGTAACCCCCGAG
TTGCAGCGCGAATTCCTCGTCCTTACGCAGACCACCGCTGGTGAGGCATT
TGGAGCCAACACCAACTGGACCATCACCATCAACTACACTGGCATCCACC
GATCTGATATGGGCGGTTTCTATATCTCCAGTTATACGGACGATGATGGC
GAACAGCACTTCTTGGCCACCACGCAATTCGAGAGCACAAACGCCCGTCA
CGCGTTTCCCTGTTACGATGAGCCTGCCCGTAGAGCTAACTTTACGATTA
CCATCCACCATGATCCCTCCTACTGTGCCATCAGCAATATGCCAGTAAAC
ACCGCTGCCACCAGCTCGGGAGTCACTGCTTTCAGACGACGCCAAAGATG
TCCACCTACCTGTGGCCTTCATCGTCTCCGATTTTGAGTCCACCACCGGA
GACTGATGTGATCCGCCAGCGGGTTTTCTCGCGCAAGGAAAGCAGATCAG
CAGAATGGCCCTTGGTCCGGATGCTTGTGAGTCCAGTCTGGCTAGCTACT
TTGGGTCCTCGCCTGCCAGCTAGATCAGCTGATACGACTTCCTGCGGGCA
TGAAACTGGGTCTGCACTACTGACTATGGGACCATCGTACTGAAAATGCA
TATGACAACCCATGTCGATGATCATGACTTGCAGGTGACTTCGAACATGT
CTGACTATCGAAACCTACGCGTCA
UFO12534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31343-RA | 3004 | CG31343-RA | 38..948 | 6..905 | 4220 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21745303..21745855 | 6..558 | 2765 | 100 | Plus |
| 3R | 32079331 | 3R | 21746186..21746341 | 559..714 | 750 | 98.7 | Plus |
| 3R | 32079331 | 3R | 21746470..21746675 | 711..905 | 470 | 93.2 | Plus |
Blast to na_te.dros performed 2014-11-28 18:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1189..1233 | 450..494 | 117 | 73.3 | Plus |
UFO12534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:13 Download gff for
UFO12534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 30..952 | 1..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:06 Download gff for
UFO12534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 33..955 | 1..914 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:13 Download gff for
UFO12534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31343-RA | 33..955 | 1..914 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:13 Download gff for
UFO12534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21745298..21745855 | 1..558 | 99 | -> | Plus |
| 3R | 21746186..21746341 | 559..714 | 98 | -> | Plus |
| 3R | 21746474..21746682 | 715..914 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:06 Download gff for
UFO12534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17571020..17571577 | 1..558 | 99 | -> | Plus |
| arm_3R | 17571908..17572063 | 559..714 | 98 | -> | Plus |
| arm_3R | 17572196..17572404 | 715..914 | 91 | == | Plus |
