Clone UFO12535 Report

Search the DGRC for UFO12535

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:125
Well:35
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptTsf3-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO12535.5prime Sequence

187 bp (154 high quality bases) assembled on 2012-11-02

> UFO12535.5prime
GTCGACATGCAGTGGCTTACACTTATTTTGGTGGGGCTGTTTGCCTCGTT
CTTATCAATATCGATGTGCGTGGCTGTGCAGCCGCCCGATGATGGAAAAT
TGCGTGTTTGTGTGGTGGAATCGCGTGGCGTTTATCGGAAAACCCCCAAG
TTCTGTTCCGCCTGCCTGGGAGGGCGGAAAGAGGCAA

UFO12535.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Tsf3-RA 2377 CG3666-RA 143..292 7..156 750 100 Plus
CG15706-RF 2419 CG15706-RF 394..487 100..7 470 100 Minus
CG15706-RD 2578 CG15706-RD 642..721 100..21 400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:31:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16226643..16226736 7..100 470 100 Plus
2R 25286936 2R 16227592..16227647 101..156 280 100 Plus
Blast to na_te.dros performed on 2014-11-28 18:31:53 has no hits.

UFO12535.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:14 Download gff for UFO12535.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 111..282 1..176 95   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:10 Download gff for UFO12535.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 136..307 1..176 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:16 Download gff for UFO12535.5prime
Subject Subject Range Query Range Percent Splice Strand
Tsf3-RA 136..307 1..176 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:16 Download gff for UFO12535.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16226636..16226736 1..100 97 -> Plus
2R 16227592..16227662 101..176 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:10 Download gff for UFO12535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12114141..12114241 1..100 97 -> Plus
arm_2R 12115097..12115167 101..176 93   Plus