UFO12538.5prime Sequence
1044 bp (955 high quality bases) assembled on 2012-11-02
> UFO12538.5prime
AGTCGACATGATCCACTGGTCTCTGATTGTCAGTGCCCTGGGCGTCTGCG
TGGCCGTCTTGGGCGGCTACTGCGGCTGGATTCTCTTCCCCAACATGGTA
CACAAAAAGGTCGAGCAGAGCGTTGTTATACAAGATGGCTCGGAACAATT
CAAACGATTTGTGAATTTACCTCAGCCATTGAACTTCAAAGTCTACATAT
TCAATGTGACCAATTCGGATAGGATTCAACAAGGTGCCATACCAATAGTC
GAGGAAATAGGACCCTATGTATACAAACAATTCCGCCAGAAGAAAGTGAA
GCACTTTTCGAGAGATGGATCGAAAATTTCCTATGTGCAAAATGTGCATT
TCGATTTCGATGCTGTTGCCTCAGCTCCATATACCCAAGATGATCGAATT
GTGGCTCTCAATATGCACATGAATGCATTTTTACAAGTATTCGAAAGGGA
AATCACAGATATCTTTCAGGGATTTGCCAATAGGCTTAACTCTCGATTGA
ATCAAACGCCAGGCGTACGAGTCCTGAAACGATTGATGGAACGTATTCGA
GGGAAACGTAAATCTGTGCTGCAGATCTCTGAGAATGATCCTGGACTGGC
TTTATTGCTAGCCCACTTGAATGCGAATCTGAAGGCTGTCTTCAACGATC
CAAGATCGATGTTTGTGAGCACTTCTGTAAGGGAATATCTTTTCGATGGA
GTACGATTCTGTATCAATCCGCAAGGAATCGCCAAGGCAATTTGTAACCA
GATCAAGGAAAGTGGATCGAAAACAATCAGGGAGAAGAGCGATGGCAGCT
TGGCATTCTCATTCTTCGGTCATAAAAATGGTTCTGGTCACGAAGTATAC
GAGGTGCATACTGGAAAAAGTGATCCTTTGAGGGTATTGGAGATTCAAAA
CTGGATGATTCGCACACCTGCAGGTGGTGGCTGATGCCAGTCAGAGGGCG
AAACTTCGGTTGCATCAAATCATGGCACTGATGCATCGCATATCGCAATT
CGCACGGAGGGGATCGATGTAAATTTTACGTGATTTTGGCGATC
UFO12538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Snmp2-RD | 2837 | CG7422-RD | 964..1994 | 8..1027 | 4715 | 98 | Plus |
| Snmp2-RC | 2481 | CG7422-RC | 608..1638 | 8..1027 | 4715 | 98 | Plus |
| Snmp2-RB | 2343 | CG7422-RB | 608..1024 | 8..424 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7736609..7736869 | 823..563 | 1290 | 99.6 | Minus |
| 3L | 28110227 | 3L | 7738539..7738700 | 276..115 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 7738334..7738482 | 425..277 | 745 | 100 | Minus |
| 3L | 28110227 | 3L | 7738107..7738244 | 562..425 | 690 | 100 | Minus |
| 3L | 28110227 | 3L | 7741968..7742078 | 118..8 | 555 | 100 | Minus |
| 3L | 28110227 | 3L | 7736401..7736541 | 961..824 | 435 | 92.2 | Minus |
Blast to na_te.dros performed 2014-11-28 18:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\worf | 4174 | Dmir\worf WORF 4174bp Derived from AY144572. | 1120..1175 | 788..731 | 114 | 69 | Minus |
| 412 | 7567 | 412 412 7567bp | 1425..1477 | 357..305 | 112 | 67.9 | Minus |
UFO12538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:19 Download gff for
UFO12538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7422-RC | 601..1612 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:35 Download gff for
UFO12538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RC | 601..1612 | 1..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:40 Download gff for
UFO12538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snmp2-RC | 601..1612 | 1..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:40 Download gff for
UFO12538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7741968..7742084 | 1..118 | 96 | | Minus |
| 3L | 7736353..7736541 | 824..1003 | 92 | <- | Minus |
| 3L | 7736609..7736869 | 563..823 | 99 | <- | Minus |
| 3L | 7738107..7738244 | 425..562 | 100 | <- | Minus |
| 3L | 7738335..7738482 | 277..424 | 100 | <- | Minus |
| 3L | 7738539..7738696 | 119..276 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:35 Download gff for
UFO12538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7729453..7729641 | 824..1003 | 92 | <- | Minus |
| arm_3L | 7729709..7729969 | 563..823 | 99 | <- | Minus |
| arm_3L | 7731207..7731344 | 425..562 | 100 | <- | Minus |
| arm_3L | 7731435..7731582 | 277..424 | 100 | <- | Minus |
| arm_3L | 7731639..7731796 | 119..276 | 100 | <- | Minus |
| arm_3L | 7735068..7735184 | 1..118 | 96 | | Minus |
