UFO12539.5prime Sequence
985 bp (763 high quality bases) assembled on 2012-11-02
> UFO12539.5prime
AGTCGACATGAGTTTTTCCAGCGACGAGGTGAACTTTCTGGTTTACCGAT
ACCTGCAGGAGTCGGGCTTTCTGCACTCGGCCTACGTGTTTGGCATTGAG
TCACACATCTCGCAAAGTAATATCAATGGCGCATTGGTTCCACCTGCCGC
TTTGCTCACCATCCTGCAGAAGGGTCTTCTGTACACTGAAGTGGAGTGGA
GCGTAGGCGAAGACGGCGAGGTGGCGCGACCCATTGAAGGACTCTCTCTA
ATAGACGCTGTCATGCCGGAGGTGAAGCCACTCAAGCCCATTGTGAAAAC
AGAGCCGGGAAAACCCGGGGCAGTCGACTCTTCTGCCCCTGCCGGTGGCA
ACCAGAACAACAATGCCAAGCCTGAGATAAAAATATAACCGGGTACCGGA
GTGGCGGGCTCAGCAGGTGGAAACAAAATTGCTGGCAGCACCACGGGCAC
AAGCACACCAACCGATCAGTCGGCAAGCGAGGTAGACTCCAGTGGAAATG
CGGCAAATAATGCTGGCGGCACATACGCCGGAGACAATGGAGCTGGAGGG
AACCAGGCCAGTACTGGAGGATCTAATAGCACAAGCACACCAGCTGGTGG
AGATTTGGCAGCACCTGGGGCAAAGTCAAAAGAAATCTGCACAAACTCGA
ATGAAAGCGGGAAGCTCATCTAGTGGCAATGCACGCAATGCAAATGCTAC
CAGTACCGATGATGCAGCCTCCTCAACATCCACAAATGGCAATAGCAGCA
CTTCCAGCAGCGTAGAACAACCCTACAAGCGGGCTGACGCCCGCTGGTGG
TAGCTGTTATCAACCTCCCATCCGGACGCCACCAGCATCGGGCGGTGCTT
CGACTGCACTGGATCTAAGGCGCCAAGTGTAGCGGTTACGATTCGCGTAG
AACTACAAGAAAACAACGTGCAAGTCTCGATACGTCCAAATGCTCATATG
CCTCTGCCTTCCAAATGGAACCATCTTCCCCCGAC
UFO12539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ebi-RA | 3327 | CG4063-RA | 322..1277 | 7..976 | 4135 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 415511..416361 | 65..922 | 3610 | 96.9 | Plus |
| 2L | 23513712 | 2L | 415388..415447 | 7..66 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:45 has no hits.
UFO12539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:19 Download gff for
UFO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 312..1249 | 1..946 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:39 Download gff for
UFO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 314..1251 | 1..946 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:44 Download gff for
UFO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ebi-RA | 314..1251 | 1..946 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:44 Download gff for
UFO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 415380..415446 | 1..65 | 94 | -> | Plus |
| 2L | 415512..416382 | 66..946 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:39 Download gff for
UFO12539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 415380..415446 | 1..65 | 94 | -> | Plus |
| arm_2L | 415512..416382 | 66..946 | 96 | | Plus |
