UFO12540.5prime Sequence
1049 bp (882 high quality bases) assembled on 2012-11-02
> UFO12540.5prime
AGTCGACATGTCACAATTCCGCGATAATTCATGGCTCGCCAATGCGCGAT
CATACGGCGTTTTGAAGAGTTTGAGAAGCTCGGCACGTTATGCCAAGGCC
AAATCCAAGTCGGCCATTAATCTCAATGCCCATCTGAAGAAGCAGCAGAA
GCTGGAGGAAGGACATCCCGAAAAGAAGAGGCAGGATAAGAAAATACTCA
GACAGAGTGTCAGTGAGGATCAGCCGATCTATGCGAATGTGGACGAGGTT
ATACCGATCCATTTAGAACCGGAAACCGGAACCGAAGTCGATGCTCTAAT
GGGTAATGCACAGGGACAGAACGGCTTCGAGGAACTCCGGCGATATGTGA
AGCAGGGCGGTGATTTTAGCAAGGAGCTCATCTTTGTCCTGCAGGAGAGA
GCCGATTCGGAGCTGATCTACTCCAAGTCGCTATCGAAACTGGCCAACAA
GCTGAACAAAGCGGGCAGGGAAATTCCCGGGAGCGTGGCCGACGCCTGGC
GTGGAGTGGCTACGGAGATGGAGAGCCGCAGCGACATCCATCGCCAGTTG
GCAGCCTCGCTAACGGATGAGCTGGTCAAGCCGCTCAAGATCGTCGTCGA
AGGACATCACAAGGCGCGCAAGGCGGTGGAAAGCAACGTGGACAAGGCGG
CGCGAGTACTGGGCGAATGGCGAGCCAGCGAGGCGAAAGCCAAGAAGGCC
TCCCATACGGCGGCGCGCGAGAACGAGAAGCTGCAGACGCATGCTGGACG
TGCGATCAGAGCACATCGATGCCTGCTCACAGGACCACAGCAGCGCAGAA
AGAGCTCAGTCAGCGAGATGATGCGTCAGCTGATACCAGCGCAAGAGCCG
AGAGCGTGAGCGTGCGATGTGATACTACACCTGTGGTGCGTCGGCGAGCA
CGCGTAGACTGGAGATGGCGTGCTCCGGGATGCCACTGCAAGCACGAAAG
CACGGCTGGCATATGCACACTTGCCAGAGTATGCACCCTCACTCGGATTG
ATCGATACTGGTGCTGAACCCGCTGCACCGACTCGAGCTGCATGGGTAA
UFO12540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42388-RC | 3014 | CG42388-RC | 666..1714 | 8..997 | 3820 | 94.2 | Plus |
| CG42388-RF | 2508 | CG42388-RF | 187..1208 | 35..997 | 3685 | 94 | Plus |
| CG42388-RG | 5133 | CG42388-RG | 1833..2577 | 312..997 | 2300 | 91.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9040037..9040317 | 34..314 | 1405 | 100 | Plus |
| X | 23542271 | X | 9051183..9051412 | 398..627 | 1150 | 100 | Plus |
| X | 23542271 | X | 9051467..9051578 | 625..736 | 560 | 100 | Plus |
| X | 23542271 | X | 9051033..9051122 | 310..399 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:51 has no hits.
UFO12540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:20 Download gff for
UFO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..1414 | 8..754 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:42 Download gff for
UFO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..1414 | 8..754 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:47 Download gff for
UFO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42388-RC | 666..1414 | 8..754 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:47 Download gff for
UFO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9030870..9030896 | 8..34 | 100 | -> | Plus |
| X | 9040038..9040316 | 35..313 | 100 | -> | Plus |
| X | 9051037..9051122 | 314..399 | 100 | -> | Plus |
| X | 9051185..9051410 | 400..625 | 100 | -> | Plus |
| X | 9051468..9051598 | 626..754 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:42 Download gff for
UFO12540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8924903..8924929 | 8..34 | 100 | -> | Plus |
| arm_X | 8934071..8934349 | 35..313 | 100 | -> | Plus |
| arm_X | 8945070..8945155 | 314..399 | 100 | -> | Plus |
| arm_X | 8945218..8945443 | 400..625 | 100 | -> | Plus |
| arm_X | 8945501..8945631 | 626..754 | 98 | == | Plus |
