UFO12542.5prime Sequence
920 bp (643 high quality bases) assembled on 2012-11-02
> UFO12542.5prime
AGTCGACATGCAGACGTCATCGTCGCGAACCGCGGACAAGACCAAGCGTA
GGATTAGAATAGTAGTGTCCGAAAACCACAACGTAGCTGCTAGTAGTGTT
GCACCTGCACCACCCACAACCGCCTTCAACACCACCACCCATCACCAAAT
ACCGAGGGAATCCGATATCGAGACGAAGCGGCTAAACATCGACTACGGCG
ATGAGGGCAGCGCCGATTGGGATAAGGACCGCGAGGTGCTCATCCTGTCT
GGGAGACGGAACAAGAATGATAAAAACTGGGAGAACTGGGAGCGCATCCG
GGAGCAGAAGCTGGAGAAGATGAAGGGCATTTGTTTCGAGAGCTATCGCC
AGTCCAAGCGGGACAAGTTACTTCAAGCTAAGCCACGACCCAAACAACTT
GATTCCACCTGGTATACGGATAACATCTACTCGAACCGCTCCGATGACAT
GGACGAGGACTACGTGCCTGATTGCTTGAAATACGGACCTTTCCGCACAC
TGAGGGACATCCACGAGCTGGACGAGAAGAGTGGGGTTACGGAAGAACGT
CGTGTTGAGGGTGAAGGATCCCCCGGCTATGGCCTGCATCGTTCCAAGAG
CTGCAAGGAGTTTCAATACCCAGCCAGGTGTGTCGGGCATGTTTGAGTGC
GCGTGGCACGGATGTAGTCAGGTGTCCCACACACTCTCTGAGATCAGAGG
TCCAGCTATCTCATGCACATAACTGCGTTGTTCTCATTAGTGCTCTGCCA
TCCGCGGGAGAGAGTTAGCGACTGATGCCCGACGACTGACAGTGCCGGAC
ATGACACGCGTGTGTGAGATTTCGGACAGAGACAGCACGGCGACACATAT
GGGGTGTTCAGAGGTGAGAAACCGCAGTTTGTGTGGAGTTGTGACAGCAC
CTCTCACACTGCGTCCCGAA
UFO12542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:32:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43729-RV | 11050 | CG43729-RV | 6954..7568 | 7..621 | 3075 | 100 | Plus |
| CG43729-RU | 10723 | CG43729-RU | 6627..7241 | 7..621 | 3075 | 100 | Plus |
| CG43729-RO | 10924 | CG43729-RO | 6828..7442 | 7..621 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:32:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15466995..15467609 | 7..621 | 3075 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:32:57 has no hits.
UFO12542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:21 Download gff for
UFO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34318-RB | 743..1368 | 1..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:46 Download gff for
UFO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RI | 6851..7476 | 1..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:51 Download gff for
UFO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43729-RO | 6821..7446 | 1..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:51 Download gff for
UFO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15466988..15467613 | 1..627 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:46 Download gff for
UFO12542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11354493..11355118 | 1..627 | 99 | == | Plus |
