UFO12543.5prime Sequence
1027 bp (906 high quality bases) assembled on 2012-11-02
> UFO12543.5prime
AGTCGACATGGCGATGCTTCCGCGGTTGATTCTGCTGCCACTGCTCCTGA
TTTTGCGGATCTCGTGGAGCGATGCTGTGCCTTTGCAGCAGTTCTCACCG
GATCCCGATGACAGCATCGAGAACTGCGGCGGCGAGAATGGAGCTCCCCT
GATGACGCCCTGCAAGAGCGCCATTATCCTGGATGCCCAGACGAGCACCA
CGCTTAAGTGCGAGGACGACGAGCCGATGAGCTGGTGGACCAGTCAATCG
CAATATGTGCATGTGAAGTCCTTCGATAATACGGAGGATCCGGCTCGACC
ATTCGGAACTAGCCTGCATCTCATCGAAGTGACGGCTGACTATGTGGCAG
CCTACTATTGCGTGAAGACTTCGAAATTCAGTCAGATCGCCAAGGAGGAG
CAGTCGGACGAGGCGATGATCGAATTGGTTAATCAAGGATACGCCAGCTC
CATCTACGTGTACGTGAATGATCCGGACACTAAGCTGGTCGATAGTCATA
ACGTGGTGACGGCACGCCAGTATACCGACGTAGTCATACCCTGTAAACCA
GCCATGCCGGACACAGAGGTGCTGCTAGAGACCAGTAATGGAGAAATGCA
TTCCAGCAAATCTGTCGGTCGATACGATCCGCAACGGGGATTCACCATCG
AAATCCGAAGCATCGTGGATGGCGGAGACTACTACTGCCGACCCAATCCG
CCATTCCCGCATATCGAAGAGGAGATGACCAGCATAGAAGTGCGCTTTAT
TGCAACCGGATTGGATATCCCTCGTACCCAAACGACTAACATGGTGTACA
CATATGCACCAGTGTCACCGATGGCGATGACGAGGTCCTCACTGTTACTA
ACCAATCGACGGGTAATTTGTCACTAATCCGTGGTGGCTGATGGGAACTT
TTATCCAGGGAGCGGGCAACGGCGAAGTCCAGCCGCTTGGCTCCGAATGA
ATGCGTCGCCCCTCACCCAAGAACAAGGGCAAGAACGGCAAACGCTTGCT
GTTACGTGAATCGTGTTCTCTCGTGAA
UFO12543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvr-RJ | 5627 | CG8222-RJ | 325..1303 | 8..993 | 4605 | 98.5 | Plus |
| Pvr-RI | 5480 | CG8222-RI | 325..1303 | 8..993 | 4605 | 98.5 | Plus |
| Pvr-RM | 5453 | CG8222-RM | 325..1303 | 8..993 | 4605 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8228494..8229012 | 595..77 | 2595 | 100 | Minus |
| 2L | 23513712 | 2L | 8227670..8227826 | 752..596 | 770 | 99.4 | Minus |
| 2L | 23513712 | 2L | 8226945..8227151 | 961..752 | 685 | 94.8 | Minus |
| 2L | 23513712 | 2L | 8230125..8230194 | 77..8 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:03 has no hits.
UFO12543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:22 Download gff for
UFO12543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RJ | 288..1278 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:00:49 Download gff for
UFO12543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RM | 319..1309 | 1..999 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:56 Download gff for
UFO12543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvr-RM | 319..1309 | 1..999 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:56 Download gff for
UFO12543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8226929..8227150 | 753..980 | 94 | <- | Minus |
| 2L | 8227670..8227826 | 596..752 | 99 | <- | Minus |
| 2L | 8228494..8229011 | 78..595 | 100 | <- | Minus |
| 2L | 8230125..8230200 | 1..77 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:00:49 Download gff for
UFO12543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8226929..8227150 | 753..980 | 94 | <- | Minus |
| arm_2L | 8227670..8227826 | 596..752 | 99 | <- | Minus |
| arm_2L | 8228494..8229011 | 78..595 | 100 | <- | Minus |
| arm_2L | 8230125..8230200 | 1..77 | 96 | | Minus |
