UFO12545.5prime Sequence
958 bp (550 high quality bases) assembled on 2012-11-02
> UFO12545.5prime
AATCGACATGGCCTCTTCCACTTCGGTTATCCCTACCACCGTAAATCCCG
ATCTGCAGAAGGAACGAGATGCAGCCAGCTTTAACAGCGAACAATTCGCC
GCTTGGTGGGCGGGGGGCGAGGAAGTGCTAAAGTTCAACCGCGGCGTTCG
TGAATATATGGAGAAGGATGTGGATTTGTCGGAGATGCTGCAGCTGCAAA
ACAAAACCCACGAAGAGATCATCGAGTTTTCCACGCGTGGAGCAATCGAA
GGCGCCAAGAAGCTACGCCGCCTGCAGGAGGAGCGCAATCCTGGCGGATA
TGTCTACTGGCCGAACTTGTATGACGCTCAAGTGATGTGGGGTCTCGTTC
CCGGTGGCAATCCTTTTGGTGTGATGTACGTGATGCTGGTGAAAGCTCTG
CAGGCTCAGTGCACTCCGGAGCAGTATGAAGAATTCGGCAAGCGGGTGGA
ACTCTTCGAGATTTGCGGCACCTATGCCCAAGCGGAACTGGGTCATGGAA
CCTACCTGCGCGGGCTGGAAACGCGTGCTGATTATGATCGAAAGACTGAT
CAATTTGTACTCAACCCCCCCAATATTTCCTCCTACAAGTGGTGGCCCGG
AGGCTTGCCCCCCAGCTCCAATCACTGCCTGATTATGGCTCAGCTGTACA
TCGACGGCGACTGCTGGGTTCCGCACTTGTTCTTTATTGACGTGCGTGTG
GAGGACACCCACGAACCTCTGCCCGGCGTCCACATCGGTGATATCGGGAA
GAAAATGGGGCTTTCATTGCCGTAAACAATGGATAGCGTTGTATTAAGTG
ACGTAACGGATTCCCTCGTACCACCAATGCTGAATGCAACATGCTCAGGG
GAGAGGCTGTGTGGAATCCTAATGGTGATTATTCCCCACCCATTGGTTGG
TTTACCTACCTTATGGCCATGGGATCCGCAACGCAGTTGTCTGTAAATTG
CCCAAAAA
UFO12545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acox57D-p-RB | 2235 | CG9707-RB | 57..900 | 8..859 | 3550 | 95.1 | Plus |
| Acox57D-p-RA | 2552 | CG9707-RA | 374..1217 | 8..859 | 3550 | 95.1 | Plus |
| CG5009-RA | 2506 | CG5009-RA | 765..836 | 467..538 | 195 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21387142..21387434 | 313..605 | 1405 | 98.6 | Plus |
| 2R | 25286936 | 2R | 21386915..21387078 | 150..313 | 805 | 99.4 | Plus |
| 2R | 25286936 | 2R | 21386682..21386825 | 8..151 | 705 | 99.3 | Plus |
| 2R | 25286936 | 2R | 21387505..21387672 | 613..782 | 560 | 90 | Plus |
| 2R | 25286936 | 2R | 17762497..17762568 | 467..538 | 195 | 84.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:19 has no hits.
UFO12545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:23 Download gff for
UFO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 322..1101 | 1..782 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:00 Download gff for
UFO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 367..1146 | 1..782 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:02 Download gff for
UFO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acox57D-p-RA | 367..1146 | 1..782 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:02 Download gff for
UFO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21386675..21386823 | 1..149 | 96 | -> | Plus |
| 2R | 21386915..21387077 | 150..312 | 99 | -> | Plus |
| 2R | 21387142..21387434 | 313..605 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:00 Download gff for
UFO12545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17274180..17274328 | 1..149 | 96 | -> | Plus |
| arm_2R | 17274420..17274582 | 150..312 | 99 | -> | Plus |
| arm_2R | 17274647..17274939 | 313..605 | 98 | -> | Plus |
