UFO12549.5prime Sequence
1033 bp (935 high quality bases) assembled on 2012-11-02
> UFO12549.5prime
AGTCGACATGGGCCTGCTGTCCGATCCGTCGATATCGACGCAAAGCAAGC
TGGTGGACGGACTGGCGCGTCATGTTCGCAAGGTGTGCTACGCCCTTTAT
GTGGCGGGTGTGGCCTGGTTCTTCTGTTTGGCGCTGCCGGAGTTCAACCA
CGGGACATATCTCTCCGAGAATGCTCTTTCGCCAGGCTTGGTCTATCCGG
AGATCCGCATCGATGCGAATCGTCTGGCCATCCAGTTGCTGGAGGAGCTG
CAGCGGGAGCGAAAGGATCATCTGTCCACCACGCCGCACGCCTGGATTGC
GGCCAAGATGAACGAGTTCGGCCTGGAGACGCACACGCACAACTACACGT
TGCGCTACCCATTTGGCGGCGGTAAAGAGTATCACGGCAAGAATATCTAC
GGCATATTGAGGGCCCCAAGAATTGCCTCCACGGAGGGCATCGTTTTTGC
GGCTCCATATCGCGCTGCCAGTTCCGTGCACACGGACATTTCCGCCAGCG
TGCCGCTTCTGCTGGCCTTCGCCGATTTTGCCCGGCGCAAGAACTACTGG
GCGAAGGATCTGATCTTCCTGATCACCGAACAGGAGCAGCTGGGCATGCA
GGGCTGGCTGGAGGCTTATCACGATGGCGACCGGGAACTGGACTTGAGCA
AGGCGTACCTGCGTCCTGGCAATTTGCCCGCTCGCGCTGGTTCGCTGCAA
GCGGCTCTGAATATTGAAGTTCAGATCTGGAGATTGACCATGTGGATGTG
CGAATAGAGGGCTTGAACGGCAAGCTGCCCAATCTGGATATGTTCAATCT
GGTGCAGAGAATTATGGGCCCGCGAGGGCATCGCCTCTGGCTATAAACAA
GCGGCCACGCAAGAAGCGTCGTCACAGCCAGTCGCCACTTCGAGCAGAAC
TTCCGCCAGATGCTGACCATGCCTGGCAGCCAGTCGTCGTGGTACCCACT
GGCAATCATGGGGCTGTTCACCGTTATCGGATCCATGCTTGGAACAATAG
CTGCAATCGAAGGGCACCCATGTCCAACTGAAA
UFO12549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GAA1-RA | 2388 | CG3033-RA | 102..1126 | 8..1032 | 4735 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5872215..5873020 | 990..184 | 3630 | 98 | Minus |
| X | 23542271 | X | 5873078..5873256 | 186..8 | 895 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:33:32 has no hits.
UFO12549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:25 Download gff for
UFO12549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3033-RA | 102..1131 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:08 Download gff for
UFO12549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAA1-RA | 95..1124 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:07 Download gff for
UFO12549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GAA1-RA | 95..1124 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:07 Download gff for
UFO12549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5872174..5873018 | 186..1030 | 97 | <- | Minus |
| X | 5873079..5873263 | 1..185 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:08 Download gff for
UFO12549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5766207..5767051 | 186..1030 | 97 | <- | Minus |
| arm_X | 5767112..5767296 | 1..185 | 98 | | Minus |
