UFO12550.5prime Sequence
1007 bp (866 high quality bases) assembled on 2012-11-02
> UFO12550.5prime
AGTCGACATGGCGTACCTACTAAGCTTTGGCATCGTGGCCGCCCTATTCC
TGGCCAGCATCTCGCTGTACCGTTACGGAAACATACCACGTCAGCACATC
CTGGTCACCCTGTCCGTGCTGACCGCCTGGTGTTTCTCCTTTCTAATTGT
ATTCACCATTCCGCTGGACGTGACATCGACGCTTTACCGGCAGTGCGTGG
AGGAGCACCGACCGACCCCAGCCCCAAATGTGACCAACACGTCGAGCGCC
ACGGTGGGTCCGCCGCCTCAGTGCCAGGAACCGTGGGGCATGGTGCCCGC
CTCCGTGTTCCCAAACCTCTGGCGCATTATTTACTGGAGCTCACAGTTCC
TCACCTGGTTGATTATGCCGCTGATGCAGTCGTACCTTAAGGCGGGCGAC
TTCACCGTCAAGGGAAAACTTAAATCGGCACTGATAGAGAATGCCATCTA
CTACGGTTCCTACCTGTTCATCTGTGGCGTACTACTCATCTATATTGCCG
TCAAAGGAGAGTCTCTGGATTGGCAAAAGCTCAAGGCAATTGCCTCGTCC
GCATCGAACACATGGGGATTGTTTCTGCTCATCCTGTTACTGGGATATGC
TCTGGTGGAGGTACCTCGATCTTTGTGGAAACAACGCCAAGCCGGGATTT
GCACTGCAATATGCCTACTTCAAGGCAGCCAAATTGAGCACTGAGAAGGC
CGAGGCTGAGGAGCATGTGGATGATATCCTTGAGTCGCTGCAAGGCCTTA
GCCGCGTCATACCCAACAATCACGAGTTGCGCCCCTGCCTGGAGACCATT
CTGCGCAAGGTTCCATGCGAACACATCACTGCGATGAGACGTGTGCATCT
TTGTCGAAGTGTCGTCAGATACACTGACTGAGCACTTGCGAGAATTGCGA
TGCAAACCTGCGTCACATCGCGCCTGATGAGCTCGGCGGCGAGCTCAATG
TGCTGCTGGGGTTTCTTTCTCGACTAGCTGCGCAGTCCCACGCCTGATCC
GTATTCT
UFO12550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42511-RA | 2767 | CG42511-RA | 535..1340 | 8..814 | 3995 | 99.8 | Plus |
| CG8135-RA | 2767 | CG8135-RA | 535..1340 | 8..814 | 3995 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9405735..9406370 | 178..814 | 3120 | 99.7 | Plus |
| 3R | 32079331 | 3R | 9404919..9405089 | 8..178 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:38 has no hits.
UFO12550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:25 Download gff for
UFO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42511-RA | 538..1356 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:11 Download gff for
UFO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8135-RA | 528..1346 | 1..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:11 Download gff for
UFO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8135-RA | 528..1346 | 1..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:11 Download gff for
UFO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9404912..9405089 | 1..178 | 98 | -> | Plus |
| 3R | 9405736..9406376 | 179..820 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:11 Download gff for
UFO12550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5230634..5230811 | 1..178 | 98 | -> | Plus |
| arm_3R | 5231458..5232098 | 179..820 | 99 | | Plus |
