UFO12551.5prime Sequence
1001 bp (919 high quality bases) assembled on 2012-11-02
> UFO12551.5prime
AGTCGACATGGCGTGTCCTTTCTTCAGGCGTGCGGACTCGCTGACACGCC
AGCCCTCGGTCATCGCCGAGCCTGGTGGCCACTGGGCGCTCGAGGACGAG
GAGCTCTCGGACGACGCCCTGACCCTCACCCACCTCCAGATGGCCATCCA
GCTGCTGACGGCGCCGTCGAACGAGGATCTCAACACGGCTGTAACGTCTT
TGGTGGCCAAGTACCGCCAGAACTGGCCCAATATCCACAAGCTCAAACTG
GATCCGCAAACCTTCAAGAGCTGTGCCAACTATGACTACTTGGCGGACAT
CCAGGAGCTGCTGCTGAAGATGGACGAGGCCAGCGCCAGCGAGATTCTGG
TGCTGCTCGGCGAGGAGCTGATCACCTGCTGCTGCACAGGTATCATTGAA
AGAGCCTTCCGCTGCCTGGGCACCGATCTGCAGGAATTCCTGGGCTCCCT
CGATGGCGTTTACGATGTGCTGAAGCTGCAGGAGGAGGACGTCACCGATA
CCGGATTCGTGTGTGCCGGCGAGGGCGAGCTGATCTTCACCTCGGAGCGC
CCGGTCATTGCCTGGTTGCTCCTGGGCTCCCTGAAGGCGCTCACCCGCAT
GCTCTACAAGGTGGACGTGAACATCAAGAACGAGCCCGTGGAGGGCGATG
CCCGGCGGTATCGCTACCTCTTCTCGCTGGTCAAGGACAACTCCCAGACC
ATGCTGATGGGTCGTCCCACTTCCGTGAGCAAAACCATCCCGGAAACGGT
GCAGCGGAGCAACTCGAGCAACGCCTCCGACCTGCAAATGAACTCGTCCA
GCTTCTGCAAGATGTTTCCCTGGCACTTCATCATGACGAGCAGCTGGAAC
TGGTGCAGTTGGGCAAGGGGATTCAGCAAATTGTACAAGCCTACATGCGA
CTTCGGGTTGCCAGCGACCACTACTTTGATTTCAACGACCAAGGATGACC
ATGAATCGGGACGTCGTGAGGCGCACCTACCCGCCTTCCTGATCGATGAT
A
UFO12551.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gycalpha99B-RA | 2354 | CG1912-RA | 176..1179 | 4..995 | 4580 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29683997..29684405 | 483..891 | 1935 | 99.3 | Plus |
| 3R | 32079331 | 3R | 29683698..29683939 | 244..485 | 1210 | 100 | Plus |
| 3R | 32079331 | 3R | 29683398..29683637 | 4..243 | 1200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:33:44 has no hits.
UFO12551.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:26 Download gff for
UFO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 174..1182 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:16 Download gff for
UFO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 173..1181 | 1..1000 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:15 Download gff for
UFO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gycalpha99B-RA | 173..1181 | 1..1000 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:15 Download gff for
UFO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29683395..29683637 | 1..243 | 99 | -> | Plus |
| 3R | 29683698..29683938 | 244..484 | 100 | -> | Plus |
| 3R | 29683999..29684523 | 485..1000 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:16 Download gff for
UFO12551.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25509117..25509359 | 1..243 | 99 | -> | Plus |
| arm_3R | 25509420..25509660 | 244..484 | 100 | -> | Plus |
| arm_3R | 25509721..25510245 | 485..1000 | 95 | | Plus |
