UFO12552.5prime Sequence
1034 bp (958 high quality bases) assembled on 2012-11-02
> UFO12552.5prime
AGTCGACATGGAGTCCAATATATATTTAGTTTTTCTATTGACGTTTCTGC
TGTACAATAATGCCAGAGCCGAAATCAGCGATCATCTGCGGGAGGACATA
CCGGACTTAGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCAATGG
CAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCCAGAT
ACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTTTACC
CACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCGATGC
CGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGATCAAC
TGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAGTAAA
CGAAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATTACTG
CAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGATGTGA
CGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGCCGTT
CTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCTTCTT
CATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCACGCGAACCAAACAGG
ACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAGCGCC
GGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCGGCTC
GGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAGGTCA
CCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCGCGGT
CACTGGCATGGCCGAACGCATCGCCGTGAAGATATTCTTCAGTCGCGACG
AGGAGTCCTGGAGCGGGGAGACAGAGATATATTAGCACCATATTGCTACG
ACATGAAAATAATTCTGGGAATTCATCGGCTCTGACTGACTTCGCGTACT
CGTGACTGCATCTGCTTCTGTCTGACATACGCAC
UFO12552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:33:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RA | 2415 | CG1891-RA | 55..1049 | 8..1004 | 4725 | 98.7 | Plus |
| sax-RB | 2716 | CG1891-RB | 417..1350 | 69..1004 | 4420 | 98.6 | Plus |
| sax-RC | 2451 | CG1891-RC | 280..1085 | 197..1004 | 3780 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:33:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808364 | 272..932 | 3165 | 98.9 | Plus |
| 2R | 25286936 | 2R | 7807070..7807201 | 67..198 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 7807566..7807644 | 196..274 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 7806538..7806598 | 8..68 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 18:33:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3516..3616 | 144..250 | 115 | 62 | Plus |
UFO12552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:27 Download gff for
UFO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 57..1055 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:21 Download gff for
UFO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 51..1049 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:20 Download gff for
UFO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 51..1049 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:20 Download gff for
UFO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7806534..7806598 | 1..68 | 95 | -> | Plus |
| 2R | 7807072..7807201 | 69..198 | 100 | -> | Plus |
| 2R | 7807569..7807644 | 199..274 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 275..935 | 98 | -> | Plus |
| 2R | 7808510..7808578 | 936..1004 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:21 Download gff for
UFO12552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694039..3694103 | 1..68 | 95 | -> | Plus |
| arm_2R | 3694577..3694706 | 69..198 | 100 | -> | Plus |
| arm_2R | 3695074..3695149 | 199..274 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 275..935 | 98 | -> | Plus |
| arm_2R | 3696015..3696083 | 936..1004 | 91 | | Plus |
