UFO12555.5prime Sequence
1031 bp (906 high quality bases) assembled on 2012-11-02
> UFO12555.5prime
AGTCGACATGTATGCAGCGAAAAACGTACGCCCGCGCAGCAGTCTCTCCA
CAGACGACAATCACCGGATCAAGGACACCAATCGGCCCCACAAGGCCCGC
AGCAACACGATCCTGACCCTCGCCGCATTCTGCGTCTTTCTGCTAGTCCT
CTGCGGCTTCCTGCTGGGCGCCCTCGTCTACGTCGGCAAGAATATAGCCG
AGGAGCACCAGAGGCAGCAGCACGCGAATGCTTCCCAGTGGGCCTTGAAC
TCCACCATCCGCACAGTTTACGTGGATCGGGACCAGTTGCTATCCACCAA
GCCCATTATCAGCGTACTTTCAGATAATCGCTTTTACACGACTCAAGTGC
CAACCAGCAAAAAATCGAGCATAATGGCAACTGTGGCGCCCGCTGTAAAA
GCCGCGAGCAAGGTGCTCCAGAATCTGGGATTCCGGCTGCCCAAACAGAT
TAAGCCAAGCAAGTACCGCCTTCATTTGCGCCCCGATCTCGAACGAAAGA
ACTATTCCGGCAATATAAGCATCAGCCTGCAAGTACTGGAGCCCATAGCC
TTCATCCCAGTCCATGTGAAGCAACTGAATGTGAGCACCGTTGAGGTGAA
GCGCCTGGATGAATCTGGAGCGCCGCTTAAGGACATCACCCCCACGCTGA
CCTTTGCCCATCCGGAGTTTGAGTACTGGGTGACCGAGTTCGAACAGCCG
CTGGAGGCGGGAAACTACTCACTGCTGCTCAACTTTACGGGATCGCTTGT
AGATCGGATTACGGGGATGTACCAGAGCTCCTACTTGGATAAGCTGAAAA
ACCGCTCCAGATCAATCATTTCCACAAAGTTTGAGCCCACTTATGCCCGC
CTAGCATTCCCCTGCTTCGATGAGGCCGCCCATGAGGCTCACTTCACCAT
AACGGTGGCCCGTCAGGGGTGATGAGTACGATGTGCTGTACACATGCTAG
TGGACAAGCGAGTATGTCGATGCGATATCACGAGGTGACTTCGCTGGAGA
CCGTACCCATGACCCTATCTGCGCCTTGGTG
UFO12555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32473-RC | 3635 | CG32473-RC | 400..1432 | 7..1031 | 4730 | 97.8 | Plus |
| CG32473-RB | 3002 | CG32473-RB | 82..799 | 322..1031 | 3155 | 96.8 | Plus |
| CG32473-RA | 3273 | CG32473-RA | 840..1070 | 809..1031 | 720 | 90.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13309467..13309955 | 322..810 | 2445 | 100 | Plus |
| 3R | 32079331 | 3R | 13308588..13308904 | 7..323 | 1585 | 100 | Plus |
| 3R | 32079331 | 3R | 13310143..13310351 | 808..1012 | 575 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:12 has no hits.
UFO12555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:29 Download gff for
UFO12555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 395..1430 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:31 Download gff for
UFO12555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 397..1432 | 1..1031 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:31 Download gff for
UFO12555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32473-RC | 397..1432 | 1..1031 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:31 Download gff for
UFO12555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13308585..13308904 | 1..323 | 99 | -> | Plus |
| 3R | 13309469..13309955 | 324..810 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:31 Download gff for
UFO12555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9134307..9134626 | 1..323 | 99 | -> | Plus |
| arm_3R | 9135191..9135677 | 324..810 | 100 | -> | Plus |
