UFO12557.5prime Sequence
853 bp (772 high quality bases) assembled on 2012-11-02
> UFO12557.5prime
AGTCGACATGTCACACATCCAATGCCTTTGGGTGTGTCTGGGTTTTTTTA
TGCTACTCGTCGACTTCATTCAACCCATCGGCTTGAATGTTTGTAACCGA
TCGCAGGTGGTTACTTACAAGAGATATGTCGAAAGGAGTAGAGTGATACC
ATACCAGCATAGATCTTTCTGGAGTGGTTGGCAGACAAAATACCGCACCG
AGTATTATACAGACGAAGAGACTGCCTACAGGACCGTAATGAGACCCAGT
TGCTGTGAGGGCTACGAAGGATCCGTTGAGAACTGCAAACCTGTCTGCAG
ACAACAGTGTCCTCAACATGGATTCTGCTCGTCCCCCAATACTTGCAGTT
GCAATGCGGGCTACGGCGGTATCGACTGCCATCCCGTTTGCCCAACGGTA
TGTGGAAAAAACGAGTTTTGCGATCGCCCCGGAGTCTGTAGCTGCCAAAA
TGGCTACAAACGAACTTCTCCCAGCGACAATTGCCTTCCAGTTTGCGAAA
AGGAATGTGGACACCATAGCTTTTGCTCGGAGCCCGGGAAATGCGAATGT
GAACCTGGGTACGAGAAAGTGGGAAACGGCACCGTCTTTCCAGATGGATA
CAAGAACAATTCAAATGGCAATTGCTCGCCCATTTGCCCAAAGGATTGTG
GCCAAAACAGCCGATGTGTGAGGCCAGGTGTGTGCGAGTGTGAAAATGGA
TATGCCGGTGACGACGGAGGCACCAATTGCCGACCCGTGTGCTCCACTTG
CCCGGAGAACGGATTTTGCCGTCAGTGATGTGTGTGTAACTCACTTCTGG
CTAACCATTTGTTTTTTTTCTTTTTTTTTTTTCGTGTGCTAGACTGTACT
ACA
UFO12557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC1-RA | 2054 | CG8942-RA | 81..842 | 8..769 | 3795 | 99.9 | Plus |
| NimC1-RC | 2999 | CG8942-RC | 275..826 | 218..769 | 2745 | 99.8 | Plus |
| NimC1-RB | 2038 | CG8942-RB | 275..826 | 218..769 | 2745 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13975331..13975881 | 769..219 | 2740 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13976477..13976689 | 220..8 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:19 has no hits.
UFO12557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:29 Download gff for
UFO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimC1-RA | 62..832 | 1..776 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:36 Download gff for
UFO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 78..848 | 1..776 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:35 Download gff for
UFO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 78..848 | 1..776 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:35 Download gff for
UFO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13975335..13975879 | 221..765 | 100 | <- | Minus |
| 2L | 13976477..13976692 | 1..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:36 Download gff for
UFO12557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13975335..13975879 | 221..765 | 100 | <- | Minus |
| arm_2L | 13976477..13976692 | 1..220 | 98 | | Minus |
