UFO12561.5prime Sequence
669 bp (566 high quality bases) assembled on 2012-11-02
> UFO12561.5prime
AGTCGACATGGCCGATATTCTCAACGTGGAGCAGCACCAAACGGTTCAGG
AGTTCAAGCAGAATCTCGAGGAGCTCGTTCCCAACTTGGATGCCAACAAA
GATGGCTTCATCGATCTGCACGAGCTAAAGGATGCCCTCAACCAGGTGGG
CTTCAAGCTGGCCGGCTACCAGGTGCGCGAAATGATTGACGAGTACAAGG
GCAAACAGCTGACTGCCTTCCAGGGCAAATTGAATCTGGAGGAGTTCGAG
GCACTGTGCCTGGACCTGAAGAGCAAGGATGTGGCCAGCACATTCAAGAC
GGTCGTCTCCAAGAAGGAGAACTTGGAGACCCTGGGCGGCATGTCGAGCA
TTTCGTCGGAGGGCACCACCCATTCGGTGCGCCTCGAGGAGCAGCTGGCC
TTCTCCGACTGGATTAACTCGAATCTGGGCCACGACAAAGGATCTGCAAC
ATCTGCTGCCCATCGATAGCGAGGGCAAGCGCTTGTATCTGAGCATCAAA
GGATGGTATTCTGCCGTGCAAAATTATCAACCACTCCTGCCCGGGACACA
ATCGATGAGCGTGCGATCAACAAGGAAGAACTCACGTCTACCGGGAGTTT
GAAAACTTGACCTGGTCTGGTTTCCTCCCAGGCGGATGGATGCAACATCG
TAAACATCGATGCCACGAT
UFO12561.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fim-RD | 3236 | CG8649-RD | 342..1004 | 8..669 | 3020 | 97.8 | Plus |
| Fim-RC | 3269 | CG8649-RC | 453..1037 | 86..669 | 2645 | 97.6 | Plus |
| Fim-RA | 3387 | CG8649-RA | 571..1155 | 86..669 | 2645 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17288459..17289037 | 664..86 | 2480 | 97.1 | Minus |
| X | 23542271 | X | 17291251..17291328 | 85..8 | 375 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:34:39 has no hits.
UFO12561.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:31 Download gff for
UFO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 337..1003 | 1..669 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:47 Download gff for
UFO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 338..1004 | 1..669 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:48 Download gff for
UFO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fim-RD | 338..1004 | 1..669 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:48 Download gff for
UFO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17288453..17289037 | 86..669 | 97 | <- | Minus |
| X | 17291251..17291331 | 1..85 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:47 Download gff for
UFO12561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17182486..17183070 | 86..669 | 97 | <- | Minus |
| arm_X | 17185284..17185364 | 1..85 | 94 | | Minus |
