UFO12565.5prime Sequence
950 bp (738 high quality bases) assembled on 2012-11-02
> UFO12565.5prime
AGTCGACATGAACACTTGTTTGGAAGGCAACTGCGAGTCGCTGCCCAACT
ATGTGGGTCGTGGCAATGCGGCCAACATCGATTTGAATCGCGATTTCCCC
GATCGCCTGGAGCAGAGCCATGTCCACCAGTTGCGCGCCCAGTCTCGTCA
GCCGGAAACAGCAGCCCTGGTAAATTGGATCGTTAGCAAACCGTTTGTGC
TCTCCGCCAATTTCCATGGCGGAGCTGTTGTGGCCAGCTATCCCTATGAC
AACTCCTTGGCTCACAATGAGTGCTGCGAGGAGAGTTTGACTCCGGATGA
TCGGGTCTTCAAGCAGCTGGCCCACACCTATTCTGACAACCATCCGATTA
TGAGAAAGGGCAACAATTGCAACGATAGCTTCTCGGGAGGTATCACCAAC
GGAGCCCACTGGTATGAGTTGTCCGGTGGAATGCAGGACTTTAACTATGC
GTTTAGCAACTGTTTCGAGCTGACCATCGAGTTGTCGTGCTGCAAGTATC
CGGCAGCAAGCACTTTGCCCCAGGAATGGCAGCGGAACAAGGCATCCCTG
CTGCAGCTGCTGCGCCAGGCACATATCGGCATCAAGGGCCTGGTGACCGA
TGCCAGTGGCTTTCCAATAGCCGATGCCAATGTCTACGTGGTGATAAGAG
AACCTGGATTCAACTGCGATATGAGTTTGCCCGGATCAACGGAGCTCGTT
TGTACAACATGCCGACAGTCGGTACACAACAGAGCTGGCTGATTACTGCC
GCAGCACTGTGCACTCGAGAAGCACGTCGCTCAAACCAAGATCATGTCTG
CCATATCACCCACTAGAGAACATGGGATACCCTCTCTACCTACACGACTC
AGCTGCTGGGTGATTGACGTCATCGGTCGTCATGCATGTGCAGGGAGTGT
ACCCAATCGACTGAAGAGTAATGAGCTGTTGCTACAGTATCAGCACGGTG
UFO12565.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| svr-RI | 5267 | CG4122-RI | 1003..1636 | 8..641 | 3170 | 100 | Plus |
| svr-RN | 4986 | CG4122-RN | 651..1270 | 22..641 | 3100 | 100 | Plus |
| svr-RM | 5611 | CG4122-RM | 651..1270 | 22..641 | 3100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:34:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 502287..502669 | 259..641 | 1915 | 100 | Plus |
| X | 23542271 | X | 501984..502221 | 22..259 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:34:53 has no hits.
UFO12565.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-02 13:58:33 Download gff for
UFO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 108..760 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:01:55 Download gff for
UFO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RC | 995..1647 | 1..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:57 Download gff for
UFO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| svr-RI | 995..1647 | 1..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:57 Download gff for
UFO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 501985..502220 | 23..258 | 100 | -> | Plus |
| X | 502287..502680 | 259..650 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:01:55 Download gff for
UFO12565.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 396018..396253 | 23..258 | 100 | -> | Plus |
| arm_X | 396320..396713 | 259..650 | 98 | == | Plus |
